Gene detail

Gene detail information of Glyur000038s00004463

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G72210.1	2.00E-69	basic helix-loop-helix (bHLH) DNA-binding superfamily protein
NR	KHN27371.1	9.03E-147	Transcription factor bHLH96 [Glycine soja]
Swissprot	tr\|Q9C7T4\|BH096_ARATH	8.00E-91	Transcription factor bHLH96
trEMBL	tr\|I1JVA4\|I1JVA4_SOYBN	3.00E-142	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G10630.1}

Sequence

Transcript Sequence

>Glyur000038s00004463.1
GTTCCCCTCTGTGGCTGAGTTTGTTTGGTCAAGGGAAGTGGTCTANAACAACAACAAAACCTCACGTGCAGCATAGGCTGTAGCTTTTTGTTTGTGTTTGCTTGATTGAAACTTTGAAGGAAAAAAAATCATCTTTAAAAGGCAGGAAGCTAAAGCTTTCTTCACAAGGGNGATGATAAAAGGGCCTGTTTGTTTGGTCTTTCGGGAATGTATATTAGTGGTTAATTCTGTTTGGGGCTCTTTTGCCAGCAGGGTCGGTCAAGCTCATTTCTTTCTCTCTGTCCAAACTATTCCCTGCCACTAGTAATTAACCTTCACCTAAGTCCTCTTTCTCTCAACTCAACACTAACCTTTTCCTACCCCTGCTCTCTGTGCCTCCTTTGTGATAGCTAAGCTTTTCTTTTTTGGTTTTCACCTGGTCTGGTCTGGACTAATCTGTGTTCGACTCACAAGAGAGCTTTCTTCTATTTTAGTTGGTAAGTCACAAATTTATAATTAAATGGCATTGGAGGCTGTGGTTTTCCCACAAGATCCATTCACATATGGTTGCTACAAGGACAATTACTTGTACTCCTTAGTGGGAGGAGGTGGTGGCCACAACTATGGTCTCCAAGAAGCAGCAGCAGAAGAAGAGAAAGTCCTCCTAGGAATCATCAGCAACAACATAGAACACAACAATCTCCATGCAAATTGGGACTCTTCTTCTCACTCTTCCACCACCCCAGAGGGCTGCACCACCGTTGATCTCCCTCCTCCTCCTTGTTCCACAGCGGAAGCAGCCACCGCGGGTCGTCGCAAACGACGTCGTACCAAGAGCGCCAAGAACAAGGAGGAAATAGAGAATCAAAGGATGACCCACATTACAGTTGAACGCAATCGCCGAAAACAAATGAATGAGTACCTTGCTGTGCTCCGATCCTTGATGCCTTCTTCTTATGTTCAAAGGGGTGACCAAGCTTCGATTATTGGGGGCGCGATTAANTTCGTGAAGGAGCTAGAGCAGCTTTTACAGTCCATGGAGGGGCAAAAGAAAACGAACAACCAACCACACNAGAATGGCGTGGGCTTAAATAACGGTTCCTCATCCCCTTTTGCTGAGTTCTTCACGTTTCCACAGTACACGACGGGTGNGACTCAGAGCAACAACACNGCCACGATGGAGCAGAACATGAACCAGGATCAGCAGAAACAGTGGGCGGTGGCAGACATTGAAGTCACCATGGTTGATAGCCATGCCAACCTTAAGATACTGTCGAAGAAACGAACCGGGCAGCTTATGAAGATCGTTGTTGGGTTACAGAGTCTCAGGCTCGCCATTCTCCACCTTAATGCTACCACTCACGACGATATGGCCCTTTACTCATTTAGTGTAAAGGTAGAGGACGGGTGTGAGATGAACACTGTGGATGAAATTGCGGCTGCTGTGAATCAACTATTACGCACGGTGCAAGAACAAGAAGAAGTGGCTTTCAACTGAATTAAATCAAACTTGACAATAATAATATTAATTTGCTTTGATTATTTTAAAAAATTTCCATCCTTCTCTTTGTTCAGTAATTTGGGATGTATAATGTGACTGTGTCCGTTGAGAATATTGAAGGGGGACATGTATGTATGTATGTATTTTGTCCTAATACCAGCATTTGTGCAAAAACTACTTTAACGTGCTGGTTTTGAAATGAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00038	147358	149617	+

Gene family

Gene family	subfamily
Transcription Factors Family	bHLH

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000038s00004463.1	PF00010.21	HLH	116	167	5.60E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	22.883
SRR1783600	control	23.007
SRR1783602	moderate drought stress	14.160
SRR1811619	moderate drought stress	14.203

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.901
DRR006520	Root Summer glycyrrhizin high producing strain	13.724
DRR006521	Root Winter glycyrrhizin high producing strain	106.363
DRR006522	Root Winter glycyrrhizin high producing strain	104.373
DRR006523	Root Summer glycyrrhizin low producing strain	25.363
DRR006524	Root Summer glycyrrhizin low producing strain	25.745
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.055
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.054

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.798
SRR2868004	Drought Stress (root)	18.668
SRR2967015	Control (root)	21.131

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.348
SRR9715740	Leaf	0.094
SRR9715741	Leaf	0.539
SRR9715739	Root	7.214
SRR9715742	Root	15.603
SRR9715743	Root	15.553

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.419
SRR8749028	MeJA induced 9h	23.709
SRR8749029	MeJA induced 9h	45.002
SRR8749030	Uninduced	12.934
SRR8749031	Uninduced	2.481
SRR8749032	Uninduced	3.518

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.359
SRR8400027	Control - Root	28.330