Gene detail

Gene detail information of Glyur000038s00004458

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G07270.1	3.00E-143	Cell division control, Cdc6
NR	XP_004500243.1	0	PREDICTED: cell division control protein 6 homolog [Cicer arietinum]
COG	YP_006363078.1	7.00E-13	ORC complex protein Cdc6/Orc1 [Thermogladius cellulolyticus 1633]
Swissprot	tr\|Q710E8\|ORC1A_ARATH	4.00E-29	Origin of replication complex subunit 1A {ECO:0000303\|PubMed:16179646}
trEMBL	tr\|I1KYU8\|I1KYU8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G45230.1}

Sequence

Transcript Sequence

>Glyur000038s00004458.1
ATGTTCCGATCTCCTCCATTTCCAACCCAAATCACACTCATTTCTCCACACTCCAAATCCGCAACTCTTTTAGTTATCGCCACCATCACCAATCCAATGCCATCAATTGCCGCCAAGCGCAGATTAACATCTCCCGCGCCACCACTCCCCGCCCCTCCCCCGCCCANCCGGAAATCTCCCCGCCGATGCACCGCCTCAACCCCCAATTCCATCCCAACCGGAAACAAATTCGGCACCGATGAGAACCAAACCGAATCGCGTGAATCCGCAACCTCGAAACCTCGATGGAATCCCAAGGATGGCGAGCAATTGAGGGCGGTGAAGGAGGTATTGCACTTGTCAACTGCACCGTCTACGATCGTGTGCCGTGAGGAGGAGCAGAATGTGGTGTTGGAGTTCTGCAAGGGTTGCGTTGAGCACGAAAAGGCTGGGAGTCTCTACATATGTGGGTGTCCCGGAACTGGGAAATCACTGTCTATGGAGAAAGTGAAAGTGCTTTTACTCAACTGGGCTACAGAGGCAGGATTACCGCGGCCAGATGTTTTATCTGTAAATTGTACATCTCTTGTCAATACATCTGATATTTTCACCAAGATACTTGGGTTAGACAAAGCACTGGGAAAAAAGGGTTCAGGCACACACTTACAGCAACTTCAGAACATGTATTCTCAGAAATCGTCTATCAAGAACATGACATTGATAGTGGCTGATGAATTAGATTATCTAATAACAAAAGACAGAGCTGTGCTACATGATCTTTTCATGCTTACCACTTTCCCATTTTCCAGATGTATATTGATAGGTGTAGCAAATGCAATTGACCTAGCTGATCGATTTCTTCCGAGGCTAACTTCATTAAATTGCAAGCCTATTGTTGTAACTTTTCGGGCTTACTCTAAAGATCAGATCCTTAAGATTCTCGGAGAAAGGCTAAATGAACTTCCTTACACCGTCTTCCAACCCCAAGCATTGGAGCTATGTGCTCGGAAAGTTGCTGCAGCTTCTGGAGATATGCGAAATGCTCTTTGTATATGCAGGAGTGCAATAGAGATGCTAGAAGCAGAAATTAGAGAATCTGCCTGCAATTTGAATACTTTGGAAGAGAAATCATCCTCAGAACTAAATCTTGCTACAGCTCCTGACTGTATAAAAAAACAAGAATTTGATATCGTAAGGATTGATCATATGGCTCTTGCCTTGTCAAAAACATATAGATCACCGGTGGTGGATACAATACAATCTCTGCCACATCATCAACAGATTATACTCTGCTCTTCTATGAAACACTTCCGTGGTGCCAAGAAATATGCAATTCTTGGGGAGTTATATAAATCTTACACGGAGATATGCAAATCATCAATAATTCCCCCGGCAGGAATTTTAGAATTTTCAAACATGTGCAGAGTGCTGAATGATCAGGTCAGTTCATTTAGCTCAGACTGATGTCTTCATTATAGGAAGTGGATATACTCGGTGAATCAAGTATCAACTTGGGCGATCTTAGAGGATATTTTATTTATTTTTTTCTCGAGCGAAAAATATCAATAGATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00038	117089	121743	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000038s00004458.1	PF13401.1	AAA_22	141	256	3.40E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.423
SRR1783600	control	4.178
SRR1783602	moderate drought stress	2.050
SRR1811619	moderate drought stress	1.899

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.495
DRR006520	Root Summer glycyrrhizin high producing strain	2.428
DRR006521	Root Winter glycyrrhizin high producing strain	0.983
DRR006522	Root Winter glycyrrhizin high producing strain	0.854
DRR006523	Root Summer glycyrrhizin low producing strain	1.404
DRR006524	Root Summer glycyrrhizin low producing strain	1.413
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.714
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.673

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.834
SRR2868004	Drought Stress (root)	4.371
SRR2967015	Control (root)	4.611

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.826
SRR9715740	Leaf	0.540
SRR9715741	Leaf	0.945
SRR9715739	Root	0.305
SRR9715742	Root	0.844
SRR9715743	Root	0.600

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.362
SRR8749028	MeJA induced 9h	11.597
SRR8749029	MeJA induced 9h	4.256
SRR8749030	Uninduced	4.584
SRR8749031	Uninduced	0.952
SRR8749032	Uninduced	1.420

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.931
SRR8400027	Control - Root	6.204