Gene detail information of Glyur000038s00004457 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G29700.1 | 2.00E-52 | pleckstrin homologue 1 |
| NR | AFK39907.1 | 1.76E-74 | unknown [Medicago truncatula] |
| Swissprot | tr|Q9ST43|PH1_ARATH | 1.00E-64 | Pleckstrin homology domain-containing protein 1 |
| trEMBL | tr|I3SI15|I3SI15_MEDTR | 7.00E-75 | Uncharacterized protein {ECO:0000313|EMBL:AFK39907.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00038 | 114017 | 116527 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000038s00004457.1 | PF00169.24 | PH | 134 | 231 | 2.10E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 90.087 |
| SRR1783600 | control | 96.963 |
| SRR1783602 | moderate drought stress | 157.102 |
| SRR1811619 | moderate drought stress | 168.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 45.377 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 51.340 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 64.997 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 67.725 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 67.614 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 68.894 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.668 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.096 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.052 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.359 |
| SRR9715740 | Leaf | 0.004 |
| SRR9715741 | Leaf | 0.006 |
| SRR9715739 | Root | 0.527 |
| SRR9715742 | Root | 0.271 |
| SRR9715743 | Root | 0.171 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.264 |
| SRR8749028 | MeJA induced 9h | 1.956 |
| SRR8749029 | MeJA induced 9h | 0.324 |
| SRR8749030 | Uninduced | 0.727 |
| SRR8749031 | Uninduced | 0.052 |
| SRR8749032 | Uninduced | 28.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.535 |
| SRR8400027 | Control - Root | 0.636 |