Gene detail

Gene detail information of Glyur000038s00004454

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G29890.2	villin-like 1
NR	XP_006602104.1	PREDICTED: villin-1-like isoform X1 [Glycine max]
Swissprot	tr\|O81643\|VILI1_ARATH	Villin-1 {ECO:0000303\|PubMed:10631247}
trEMBL	tr\|I1N029\|I1N029_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G07460.1}

Sequence

Transcript Sequence

>Glyur000038s00004454.1
GTCTTGCTTTTCATTGTGGCAAATGGGAATATCCAAGTTTTGTTCTTTCCCTGTCTGTTCAAGCATCAGCATCAGCATCACTCTCACTTGTTAGGTGTTGAATCCTCCTGAATTTGCCTTAGTGCCAAACCAAGAATAACCTCGTGTTGCATTATTCTGGTGGAGTATTAGAGCCATAGAGACAATGCCTGTTTTCAGTAAAGACTTGGATCCCACATTTCAAACTGCAGGAGCAAACCCAGGCTTGGAAGTCTGGTGTATTGAGAACCAGCAGTTGGTTCCGGTGTCTAAGTCAAACCATGGAAAATTCTATACTGGAAGTGCATACATAGTTCTGAATGCAGTTTTTCCAAAAAATGGCCCTCCTCAGTATGACGTTCATTATTGGCTGGGAAATGACACAAAGAAGGTTTGGATTGTTTCTTGTTTTACTGTCTTGCTTGCAATGGCTGATTCAAGCTTGGCATCGGNCAAGGCACTTGAGTTGGATGCGGCNTTAGGATCCTGCAGCGTTCAATATAGGGAAATTCAAGGCCAAGAATCACAGAAGTTTCTATCATACTTCAAGCCTTGTTTGATACCCATTGAAGGAGTGTTTACTTCAAAGCCAGGGAATGTGAATGGTGAATACCAAGTCAGCCTGTACACATGCAAAGGAGACTATGTTGTCCACGTGAAAGAAGTTCCTTTCCTGAGGTCATCATTGAATCATGAAGANGTGTTCATACTTGACACCGCATCAAAAATCTTCCTCTTCAGTGGGTGCAACTCTACCATTCAAGAAAGAGCCAAAGCTTTGGAGGTTGTTCACTATATCAAGGAGAATAAGCATGGTGGAAAATGTGAGGTGGCCACAATAGAGGATGGAAAATTTGTTGGTGATTCTGATGTGGGAGAATTCTGGAGCTTATTTGGTGGTTATGCTCCAATTCCTCGAGAATTGCCCTCTGTTCAGGAATCCGTGGCTCCATCTGTAAATCTATTTTGGATAAATTTGCAGGGAAAACTTTGTCAAACAGGAAGCGATGCATTCAGNAAAGAAATGCTGGAGACAGACAAGTGTTATATGTTAGACTGTGATAGTGAGATTTTTGTCTGGATGGGAAGGCAGACTTTATTGACAGAAAGAAGAACAGCAATCAAAGCTATAGAAGATTTTGTCAGAAATGAAGGCAGATCAAACAAGACTCATTTGACATTTTTATCAGAGGGATTGGAAAGTACCATCTTTCGTTCATACTTTACTAATTGGCCTAAAACAGTGGAGCCTAGGCTTTATGAGGAAGGGCGAGAAAAAGTGGCAGCCATATTCAAGCATCAGGGTTATGATGTGAAAGAGCTTCCTGATGAAGAGGATGAGCCNTCGATAGATTGCAGTGGCACAATAAAAGTTTGGCGGGTGGATGGTGATGAATTATCCCTTCTTTCATTTACGGAACACACAAGACTATACAGTGGAGATTGCTATATTGTACAGTATACATTTCCAGGAAAAGGAAGGGATGAGACTCTGTTTTATGCTTGGCTTGGCTGCAGATGTGTAATGGAGGATAAAACAGCTGCCATTTCCCACATGAGTACTATGGTTGATTCTGCCAGAACTAATCCAGTTATCGCTCAAATTCATGAGGGTAAGGAGCCATCTCAGTTTTTCTCAATACTCCAGAGGTTAATCATATTCAAGGTTTCAAGCTCCCTGAATTCATCCTATTGCTACATTCTGCAAACTGAAGCAGCTACCTATACTTGGATTGGGAGCCTATCTTCAGCTAGAGACCATAATCTTCTTGATAGAATGGTTGAACTGCTTAATCCAACACGGCAACCTGTATCTGTGAGGGAAGGGAACGAACCGGATATTTTCTGGGATGCTCTTGGTGGAAAAGCAGAATATCCAAAAGGGAAAGAGATTCAAGGATTCATAGATGATCCACATTTGTTTGCTTTAAAAATAACCAGAGGGAAAACATGTCTAATTGATGGTTCTGTTTCTCACTCAAATTTATTGGAACTTCAACTCAGGAGACTTNAAGGTAAACTACTTCCACAAATTCAAATTGTCCATGTGAAAGAGATATACAATTATACGCAGGATGACTTAATTACTGAAGATGTCTTATTGCTTGATTGCCAAAGAGAGATTTATGTTTGGGTTGGCCTACTTTCGGTTGTCAAATCAAAACAAGAAGCTCTCAATCTTGGCTTGAAATTTCTGGAAATGGATGTCCTTGTTGAAGGCCTATCGCTGGAAATCCCTATTTATGTTATAACAGAAGGTCATGAGCCACCATTTTTCACTCGTTTCTTTTCATGGGATCATTCAAAAGCAAATATTGTTGGCAACTCATTTGAGAGAAAGCTTGCAATTCTGAAAGGAAAAACAAAGACTCTAGAAGGACATAATAGAATCCCATTGAAAGCAAGCTCCAGGGACTCTACCCCTAATGGTCACAGAAGCAATTCTATTATCTCCGATGGCCGTGGAAGAAGTAGTTCACCTGTACCTAGTAGCGCAGGCTCAGATCTTAGGCAATCAGGTGGCCGGCTTCTTTCGAGCCCTTCTCCAGTCGCCAAGAAGCTCTTTGAAGGATCTCCTGCCAATAGCAGTGCTGAACAAACAATGCCACNGTCTGGTTCTCCAGCAACAGAACCGAGCTCATCAAATGAGAATGCAAGTTTCACTCAGAAGGATAGAAATGTGGATGGTGAGAATTTGTTGATATACCCTTATGAGCGCCTGAGAGTGGTTTCTGCTAATCCAGTAACAGGCATTGATTTAACCAAAAGAGAGGTATATTTATCTAATGAAGAGTTCCACGAGAAGTTTGGAATGCCAAAATCTGCCTTCTACAAGCTCCCTAGATGGAAACAAAACAAGCTAAAGATGTCACTGGATCTATTTTAGAGGAGTGTGTGTGTTTGAGAGGCATGGACAACAAATGCCTGTGTTTTGTGGCACTATACTGCAACACTTTATATATAGCATGATACAANTTTTCCTCATCAGTGCATTATGCGTTTGAGCTATAATAGCTCTCTTTTTTGTGAAACACGTCCTAGTTAGGATTCTTGGTTATTATCATAATATACTACATATTTATTCTTTCATTTTATGAGGATGCTTTAGGGGCATGCATGTGTAATTGTTCTGTTTTTCACTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00038	96395	109408	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0007010 cytoskeleton organization

GO:0051017 actin filament bundle assembly

molecular_function
GO:0003779 actin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000038s00004454.1	PF00626.17	Gelsolin	163	229	5.10E-07
Glyur000038s00004454.1	PF00626.17	Gelsolin	285	342	1.50E-05
Glyur000038s00004454.1	PF00626.17	Gelsolin	633	704	4.40E-06
Glyur000038s00004454.1	PF02209.14	VHP	871	906	1.90E-14
Glyur000038s00004454.2	PF00626.17	Gelsolin	163	229	5.30E-07
Glyur000038s00004454.2	PF00626.17	Gelsolin	285	342	1.60E-05
Glyur000038s00004454.2	PF00626.17	Gelsolin	658	729	4.50E-06
Glyur000038s00004454.2	PF02209.14	VHP	896	931	2.00E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.352
SRR1783600	control	12.463
SRR1783602	moderate drought stress	11.649
SRR1811619	moderate drought stress	11.640

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.253
DRR006520	Root Summer glycyrrhizin high producing strain	9.340
DRR006521	Root Winter glycyrrhizin high producing strain	2.102
DRR006522	Root Winter glycyrrhizin high producing strain	2.074
DRR006523	Root Summer glycyrrhizin low producing strain	10.995
DRR006524	Root Summer glycyrrhizin low producing strain	10.764
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.695
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.561

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	47.832
SRR2868004	Drought Stress (root)	40.358
SRR2967015	Control (root)	39.075

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.395
SRR9715740	Leaf	4.198
SRR9715741	Leaf	4.875
SRR9715739	Root	2.650
SRR9715742	Root	10.559
SRR9715743	Root	9.496

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.334
SRR8749028	MeJA induced 9h	52.208
SRR8749029	MeJA induced 9h	13.987
SRR8749030	Uninduced	36.701
SRR8749031	Uninduced	20.686
SRR8749032	Uninduced	16.981

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	54.960
SRR8400027	Control - Root	62.879