Gene detail

Gene detail information of Glyur000037s00002677.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35260.1	1.00E-170	isocitrate dehydrogenase 1
NR	XP_004512246.1	0	PREDICTED: isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial-like [Cicer arietinum]
COG	YP_008088736.1	1.00E-108	isocitrate dehydrogenase, NAD-dependent,mitochondrial type [Chthonomonas calidirosea T49]
Swissprot	tr\|Q8LFC0\|IDH1_ARATH	0	Isocitrate dehydrogenase [NAD] regulatory subunit 1, mitochondrial (Precursor)
trEMBL	tr\|I1LI93\|I1LI93_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G08920.1}

Sequence

Transcript Sequence

>Glyur000037s00002677.1
AACAACCCAATTTAAGCTCCCCCGTCGGAGATGCTCATGTGAGAGATTCCCTGCTTTTATTATTCCTCTACTCCGCGTTTCACCTTTCCATGGCTTCTCGAATCGCATTCGCGTCACAGTTATAGCACCATCCCAAAAGGGAAACCGCTGAAATTTCAAAAACCCTAGCACGCCACCGCCAATGGCGACGAGACGATCCACACAGCTCCTCCTGAAGCAGCTTCGCTCCCGCCTCAACCCGACCCGCTCCGTCACCTACATGCCCCGACCCGGCGACGGCGCACCACGGGGAGTAACCCTAATCCCGGGCGACGGAATCGGGCCACTGGTGACCGGAGCTGTGGAGCAGGTGATGGAGGCGATGCACGCGCCGGTGTACTTCGAGAAGTACGAGGTGCGCGGNGACATGAAGAAGGTTCCGCCGGAGGTGATGGAGTCGATCAGGAAGAACAAGGTGTGCCTGAAAGGAGGGCTTGCGACTCCGATGGGCGGTGGAGTTAGTTCCCTCAACGTGCAGCTGAGGAAGGAGCTCGATCTCTACGCTTCACTCGTTAACTGCTTCAACCTCCCTGGCTTGCCCACGCGCCACGACAACGTCGACATCGTCGTCATCAGGGAGAACACCGAGGGCGAGTACTCCGGCCTCGAACACGAGGTCGTTCCCGGCGTCGTCGAAAGCCTCAAGGTAATAACAAAGTTCTGTTCAGAGCGCATTGCTAAATATGCTTTCGAGTATGCTTATCTAAANAACAGAAAGAAGGTGACTGCTGTGCACAAAGCAAACATTATGAAACTTGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCACAAAGTATCCTGGAATCAAGTATAATGAAATTATTGTAGATAACTGTTGCATGCAGCTTGTTTCAAAGCCCGAGCAGTTTGATGTCATGGTAACCCCCAATCTTTATGGAAATCTCGTTGCAAATACAGCAGCAGGTATTGCTGGAGGCACCGGTGTCATGCCGGGAGGTAATGTTGGGGCTGACACTGCTGTATTTGAACAAGGTGCTTCAGCAGGAAATGTTGGTAATGAAACACAATTGAAAGAAAAGAGAGCCAACCCAGTGGCACTCCTCCTTTCGTCGGCCATGATGCTTAGACATCTTCAGTTTCCTGCATTTGCTGACCGATTGGAAACCGCNGTGAAACGAGTCATTTTTGAGGGCAAACACCGGACAAAGGACCTTGGAGGGTCAAGCACCACCCAAGAGGTTGTTGATGCTGTCATAGATGCTTTAAATTGATTGTATTNACATTTGCTCATCTACCAAATGAAAGCCAGCGTCGCAAATTCTCTTTATCGACTATAGTTTGCACCCTCTAAAAGGGAAATTGCCAATTTTTGGTCCTGAATAATGTTTATTCAACACAGAAAATGATGTGATAAGAATTTTTTATAGAGTGCGCGGCAACTGTTGTCTGTTTACCAGTCCTTTCTAAACATTGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00037	515393	519535	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00030	IDH3	EC:1.1.1.41	Carbon metabolism	map01200
			2-Oxocarboxylic acid metabolism	map01210
			Biosynthesis of amino acids	map01230
			Citrate cycle (TCA cycle)	map00020

Gene Ontology

biological_process

GO:0006099 tricarboxylic acid cycle

GO:0055114 oxidation-reduction process

molecular_function

GO:0000287 magnesium ion binding

GO:0004449 isocitrate dehydrogenase (NAD+) activity

GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000037s00002677.1	PF00180.15	Iso_dh	38	360	4.60E-78

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	54.083
SRR1783600	control	53.585
SRR1783602	moderate drought stress	51.434
SRR1811619	moderate drought stress	51.210

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	86.108
DRR006520	Root Summer glycyrrhizin high producing strain	85.813
DRR006521	Root Winter glycyrrhizin high producing strain	75.480
DRR006522	Root Winter glycyrrhizin high producing strain	73.752
DRR006523	Root Summer glycyrrhizin low producing strain	74.301
DRR006524	Root Summer glycyrrhizin low producing strain	75.045
DRR006525	Leaf Summer glycyrrhizin high producing strain	49.595
DRR006526	Leaf Summer glycyrrhizin high producing strain	50.105

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	88.924
SRR2868004	Drought Stress (root)	70.760
SRR2967015	Control (root)	70.442

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	48.039
SRR9715740	Leaf	48.569
SRR9715741	Leaf	53.244
SRR9715739	Root	46.908
SRR9715742	Root	52.444
SRR9715743	Root	48.652

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	55.515
SRR8749028	MeJA induced 9h	52.875
SRR8749029	MeJA induced 9h	42.965
SRR8749030	Uninduced	36.253
SRR8749031	Uninduced	25.376
SRR8749032	Uninduced	26.859

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	79.136
SRR8400027	Control - Root	71.919