Gene detail

Gene detail information of Glyur000037s00002675

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35640.1	5.00E-125	serine acetyltransferase 3;2
NR	XP_003612319.1	0	Serine acetyltransferase [Medicago truncatula]
COG	YP_526558.1	1.00E-99	serine O-acetyltransferase [Saccharophagus degradans 2-40]
Swissprot	tr\|Q10S58\|SAT2_ORYSJ	5.00E-158	Probable serine acetyltransferase 2
trEMBL	tr\|G7K010\|G7K010_MEDTR	0	Serine acetyltransferase {ECO:0000313\|EMBL:AES95277.1}

Sequence

Transcript Sequence

>Glyur000037s00002675.1
CACGTGTCACAATTTACGATGTTAAAAGTATGGAATACTAACGGATAACTGATGATTTCTCTCCGTGTGTTGTGCACTTGTGCTGGAGAAGGCACCAACAACTGTAACAGTTGAGAGGAGGTGCGAAACGCAGGAAAGCAAAGCAAAGACAGTGGCCAAAGCAAGAGCACCACTTGCTACTACTAAAACACCACCACCACCTGTCTTCCTTTTTCCCCACAATTCGCGACGGTTACTCTTCTATTTCAACCCCTTTCACCACCCTTGCATGGCATGTCTCAGCCACCACCACAACCGCAACCATATTTGGCTCACTCTCCCCAACAACAACAACAACAACAACATGCTCTCCGAACGCTTCCCTCTCTCCCAAGCCTATCGCCTCGAGAAAGTCTTCCCCGTTTACGCCATGGGTATCCCCGACCCGGATCCGGATTCCATTTTAGACGGGTCTGACCCGATTTGGGAAGCCGTCAAACAAGAAGCCAAGCTTGAAGCAGAAAAGGAGCCAATTTTGAGTAGCTTCTTGTACGCGAGTGTTTTGTCGCATGAGTGCTTGGAGCAAGCGTTGGCGTTTGTTGTTGCAAACCGTCTCCAAAACCCTACTCTTTTGGCCACTCAGCTTATGGATATATTTTGCAATGTCATCATGCATGATAAGGCTATCCAGCGATGCATTCGTCTTGATGTTCAGGCTTTCAAAGATAGGGACCCTGCATGTTTGTCATACTGCTCGGCACTTCTGTATATGAAGGGTTATCATTCTCTGCAAGTATATCGAGTAGCCCATGCATTGTGGCACCAGGGTCGCAAANTCTTGGCCTTGGCTTTGCAAAGCCGTGTTAGTGAGGTTTTTGGAGTTGACATTCATCCTGCTGCGAAAATTGGGGAGGGAATTTTATTAGATCATGGGACAGGCGTGGTTATTGGTGAAACTGCTGTTATTGGAAACAGAGTTTCATTGATGCAAGGTGTAACATTAGGAGGCACGGGGAAGGAAACAGGTGATCGCCACCCCAAAGTAGGCGAAGGGGCACTAATCGGAGCTAGTGCAAATATACTTGGAAACATAACAATTGGTGAAGGCGCGATGATAGCTGCTGGCTCCCTTGTGTTAAAAGAGGTCCCTCCCCACAGCATTGTGGCAGGAATACCGGCAAAAGTTATCGGAGGCCAACAGGAGCATGACCCATCTTTAACCATGAAACATGATGCTACAAAACAATTTTTCACACATGTAGCTGCTAACTTTAGAGATGAAAAGCCCAATGGAGCACAGAATCAAGATAGAAATGAAGTGAACACTTGAGAGGTTCGGTAGCATAGATCTCATTTAGCATTCATTTGCCTTCAAAGGAAGGATGGTGTTGTTATACATAAATCATGATCAGTTCNAAATGATAAAGTGGGTGTCGAATATCAACTATACTTTCAACTTTTCATAGTTGCAATTTATGCTGCTGAGTGCCGAGGTTCTTGTTGCACCAGTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00037	504992	510481	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00640	cysE	EC:2.3.1.30	Carbon metabolism	map01200
			Biosynthesis of amino acids	map01230
			Sulfur metabolism	map00920
			Cysteine and methionine metabolism	map00270
			Biofilm formation - Vibrio cholerae	map05111

Gene Ontology

biological_process
GO:0006535 cysteine biosynthetic process from serine

cellular_component
GO:0005737 cytoplasm

molecular_function

GO:0009001 serine O-acetyltransferase activity

GO:0016740 transferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000037s00002675.1	PF06426.9	SATase_N	65	168	1.90E-34
Glyur000037s00002675.1	PF00132.19	Hexapep	249	282	2.90E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.016
SRR1783600	control	5.090
SRR1783602	moderate drought stress	9.155
SRR1811619	moderate drought stress	9.081

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.486
DRR006520	Root Summer glycyrrhizin high producing strain	14.359
DRR006521	Root Winter glycyrrhizin high producing strain	13.441
DRR006522	Root Winter glycyrrhizin high producing strain	12.846
DRR006523	Root Summer glycyrrhizin low producing strain	16.157
DRR006524	Root Summer glycyrrhizin low producing strain	15.704
DRR006525	Leaf Summer glycyrrhizin high producing strain	52.984
DRR006526	Leaf Summer glycyrrhizin high producing strain	51.952

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.609
SRR2868004	Drought Stress (root)	18.695
SRR2967015	Control (root)	17.828

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	48.461
SRR9715740	Leaf	67.098
SRR9715741	Leaf	46.044
SRR9715739	Root	3.089
SRR9715742	Root	8.344
SRR9715743	Root	7.968

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.345
SRR8749028	MeJA induced 9h	3.116
SRR8749029	MeJA induced 9h	2.361
SRR8749030	Uninduced	3.297
SRR8749031	Uninduced	0.627
SRR8749032	Uninduced	1.470

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.017
SRR8400027	Control - Root	11.836