Gene detail information of Glyur000037s00002668 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G17580.1 | 2.00E-111 | Polynucleotide adenylyltransferase family protein |
| NR | XP_003516528.1 | 0 | PREDICTED: uncharacterized protein LOC100794882 [Glycine max] |
| COG | YP_004419596.1 | 9.00E-41 | hypothetical protein UMN179_00667 [Gallibacterium anatis UMN179] |
| trEMBL | tr|K7K447|K7K447_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G36420.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00037 | 464609 | 470538 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000037s00002668.1 | PF01743.15 | PolyA_pol | 52 | 182 | 9.20E-26 |
| Glyur000037s00002668.1 | PF12627.2 | PolyA_pol_RNAbd | 210 | 272 | 7.80E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.961 |
| SRR1783600 | control | 1.920 |
| SRR1783602 | moderate drought stress | 1.801 |
| SRR1811619 | moderate drought stress | 1.874 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.878 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.638 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.071 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.844 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.431 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.046 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.757 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.628 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.784 |
| SRR2868004 | Drought Stress (root) | 3.873 |
| SRR2967015 | Control (root) | 4.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.694 |
| SRR9715740 | Leaf | 1.231 |
| SRR9715741 | Leaf | 1.199 |
| SRR9715739 | Root | 0.357 |
| SRR9715742 | Root | 1.487 |
| SRR9715743 | Root | 1.238 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.629 |
| SRR8749028 | MeJA induced 9h | 4.188 |
| SRR8749029 | MeJA induced 9h | 3.796 |
| SRR8749030 | Uninduced | 1.408 |
| SRR8749031 | Uninduced | 0.723 |
| SRR8749032 | Uninduced | 0.857 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.649 |
| SRR8400027 | Control - Root | 5.098 |