Gene detail

Gene detail information of Glyur000037s00002660.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35590.1	3.00E-74	RWP-RK domain-containing protein
NR	XP_003516525.1	0	PREDICTED: protein RKD5-like [Glycine max]
Swissprot	tr\|O81791\|RKD5_ARATH	2.00E-93	Protein RKD5
trEMBL	tr\|I1J8D1\|I1J8D1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA01G36360.1}

Sequence

Transcript Sequence

>Glyur000037s00002660.1
ATGGATTCCTCTCTGCTGACCAACCTACTCGTCTTCAACAACACCATTCAACGAGAGTTGATGAGGAGNGTGCATGTGTACCGCCAATGGGATGGGGAGGAAAATGAAGTTGAAAGAGAGTTTGTGTTCTCAGAGAGTGGCNCCTATGTGGAAATGCAAGCTACCCCAATTCTCAGATTGCTGAAACAACCTCGGGTCTCAGAAGTTTGTGAAGGGTACCAGAATGGTGTGTGGCTTTGTATCTTTGCTTTTCACGCCTCTCACACCCCTCAATTTTCCCACATTCCATCAATCTTGTTGGTCACAAGAAACCCAAAGCTTCAGACGATTCCGAACTTGCTTAATGATCTCCACATGATATACAAGTTGGACTGGAAGGAGGAAGACAGAGACAATGTTATTCCACAGGACTCTACAGAGGAAGAATGGCAAGGAAACAACAACGATTGCCAACCATCGAAAAAAGTCGTGCCCGTGCTCAATCAGGATCTCAATTGTCTTCCTTACGAAGAGGAAGAAGAAGAAGAAGAAGACGAGTCTGAGTCACCGGATAATGACATAGATGTTGAAAGTTTACCAGGTTTGGTAGGAAAGAAAAAGAGGGCACCCAGCGACCATATAGCGAAAATCGCTTTATCAGATTTGGTCAAGTACTTTGATATGCCAATTGTAGAAGCGTCAAAAAATNTAAATGTTGGGCTAACTGTTCTCAAAAGGAAGTGCAGAGAATTCGGTATCCCCCGCTGGCCTCATAGGAAGATCAAATCACTTGACAGTCTCATTCATGATCTTCAGGAGGAGGCAAAACACCAGGAATTGGAGGACAAAGCCGCGGCGATGGCGGTGACAAGGAGGCAAAAGATGTTGGAGAGTGAAAAGGAAAGCATAGAGAAGAAGCCCTTCATGGACATACAGAGTGAAACCAAGAGATTCAGGCAGGATGTGTTCAAGAGAAGGCACAGAGCTAGANCAGCTATTGAAAAGCAAAATTCTGCAGTATCCACCACTTATTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00037	411471	415452	+

Gene family

Gene family	subfamily
Transcription Factors Family	RWP-RK
EAR motif-containing Proteins	RWP-RK

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000037s00002660.1	PF02042.10	RWP-RK	208	257	5.30E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.460
SRR1783600	control	0.404
SRR1783602	moderate drought stress	0.079
SRR1811619	moderate drought stress	0.110

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.213
DRR006520	Root Summer glycyrrhizin high producing strain	0.240
DRR006521	Root Winter glycyrrhizin high producing strain	0.109
DRR006522	Root Winter glycyrrhizin high producing strain	0.061
DRR006523	Root Summer glycyrrhizin low producing strain	0.185
DRR006524	Root Summer glycyrrhizin low producing strain	0.443
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.088
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.911

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.456
SRR2868004	Drought Stress (root)	0.310
SRR2967015	Control (root)	0.374

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.864
SRR9715740	Leaf	0.062
SRR9715741	Leaf	0.604
SRR9715739	Root	0.000
SRR9715742	Root	0.068
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.201
SRR8749028	MeJA induced 9h	0.143
SRR8749029	MeJA induced 9h	0.176
SRR8749030	Uninduced	0.045
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.198

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.819
SRR8400027	Control - Root	0.237