Gene detail

Gene detail information of Glyur000037s00002648

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G35520.1	4.00E-116	MUTL protein homolog 3
NR	AES95326.2	0	DNA mismatch repair protein, carboxy-terminal domain protein [Medicago truncatula]
COG	YP_008053802.1	3.00E-11	DNA mismatch repair protein MutL [Salinarchaeum sp. Harcht-Bsk1]
Swissprot	tr\|F4JN26\|MLH3_ARATH	1.00E-130	DNA mismatch repair protein MLH3
trEMBL	tr\|G7K187\|G7K187_MEDTR	0	DNA mismatch repair protein, carboxy-terminal domain protein {ECO:0000313\|EMBL:AES95326.2}

Sequence

Transcript Sequence

>Glyur000037s00002648.1
GTGGAATTACTCGAGATGGATTGGAATTGGTGGGAGAAAGATATGCAACATCAAAATTTCTAAATTTGGCTGACCTGAATGCCACAAATGGAAACTTTGGTTTTCGTGGGGAAGCTTTAGCTTCCATTTCTGAAGTCTCTTTGTTGGAAATTGTGACAAGAGCCNATGGAAGGCCAAATGGATACCGAAAAGTATTGAAGGGGTGCAAGTGTTTACATCTTGGTATTGATGATAATAGAAAGGAAGTGGGCACAACAGTTGTTGTCTGTGAATTATTTTACAACCAACCGGTTCGGAGGAAATACATGCAATCCAGGTTCCTTTTTCTCTTGTCCCACCATACAAGTGATATGTTTTTTGAAGTTGTATTGTAGTTACCTTGTATGAAAACTATGGCTCTATTTGAAAATTTTGGATTNACTGATGATTTCCATCTCTGAACCGGAAGCCCCAATAAGGTACTGCAATCAATCAAGAAATGTATAATGCGGCTTGCACTTGTGCGCCCAAATATTTCCTTCAAAGTTGTTGATATTGAAAGAGAGGATGAGCTTTTTTGTGCACATTCTGCTTCTTCTCCACTGTCACTTGTAACTAGTGGCTTTGGGGTGGAGGTTACAAGCTCTCTTCATGAATTAGAAGTTGAAAATGATATCATGAAACTTTCGGGATACGTATCAGGTCCTTGCAATACTCTGAATATGAAGTTCATTTGCAAGGGCCCGATTCATAAGCTTCTGAATCAATTGGCTATTAGGTTTGAGCATCTTAACTCATGGAACACTGATAATGAATGCCAAAACAAGAAGAGAAGTAGATCTCAACCATGTCCAGCATATATCTTGAATTTAAGGTGCCCCCGGTCTTTGTATGTTTTGAGCTTTGAGCCATCAAAAACTCATGTTGAATTCAAGGATTGGGCTCCAATACTAAACTTTACTGAGAAGGCTGTCAAACAGTTCTGGGAGGGAAGCATAGCTTGTGGAGATTCCTCCAATCAAGCCACTTACATGGTTCAAGAAGATATATCAAAATTTGGAAACCAAAATCGTAAGGATTGTTTAGACCTCTTTCCCACTTCAGACAAGCTAATGGAAGATGACTATCATCAATCCAACAGGGAAGATGTTAAAACCTCTCCTGGTTACTTATATCAAGGGACTGCAGTGTTCAAAGAGCAACAAAGTAAGGGAGACTTTCTTTGTCAGACTGCTTATTCTGGCAATTTACTGGATGTTTCATATGCCAAATGCATGTCCACCACGATGAGAAAGCATCATGGTGTGTTGATGTATGATAACAATGGTTTATTGCAAGGAGATTACCTTTTGGATGAGATTGGTGGGGATTTTCAAAAGCCTTTTCTAAAAAGATGCTCTACACAAGAAGGACCCATCCTCCACGAGAAGTCTCTGCTTGTGAATGATGAAGATGAACTCCAAACTGATAGCTTTTGGAGCAAGCAAAATCTGGGGGAGGATTGTCACAGTGGCAAGGATTTATGTGCCCGTCCCTGTCCAGAAGTTGCAAAAAAATTAAAAATGTCTGAAGATTCTGATTTTCTCTTGAGAGCATGGTCTGAAGAAAATTGTCTTCCTTCAGATTCATGCTATTCNGCAGCACAAACAGGAAGCTTGTGGTGTGATGATTGGTTATCGAATTCTAAATGGCATCCTGTCTATCAAGAGNCCTCATCTCAAGCCACTGCATTGGGTGTTTATCATACAAATGATATTAATGATCTTGACGGAGTATCTAAATGCTATAAAAGGGTCCATTGTACACAAATTTTTGATGATGAAGAAAACAGATGCAATTTCAGCTACAATGTGTCAAGGAATGCCAATCAGCATCACTGTACCTCAAGTTTTGCAAATAGTGGATTTAATTTTGATGGTGCTGTTGATTCTAGTGAAATATTCAACGGATTGGTTGACTGGCCTGATTTCCGTGNTATGTATTCCACAAAAAAGTCAGGTATTTTAAATGACGAGCCAGGCTGGCNGTTGCCTGAGTCATGTGTTAGAAACTGCAAGAGACCTAACATTAACAAAGGCAAAAGGGATCATTTTTGGCATCCAGCTTTGGAGAAGAATCACGAAAGATCTAAAAGAAGCCTCTCAGCTCCTCCATTTCATAGGAGTAAAAGGAGGTTTTTCTCTTTAAATCAGCCTCCAGAAANGATAGCCAAAAGACCTACTGGCCAAGCATCCAACCCTGCTTTCAATCCTCTAGATGCTAGTGATTTTAAATATTCTCAACATTCTCCTGGTGCTNTTTACCCTGGCAATGAAGATCTATTGCAAGAATTAAAAACTAGTCTAAAACACAGTTCAGAGGTTCTGGGAGATACACAGGTTAATGACATTACAGAGATTGATGGTCTTGAAAGTTTCAATGTTCAACACAATGATCCATTCAGGGAATTGATCTCTAGGGAAGTGCAAGATTCCAGAGATTATGGGACCAAATGGAGGAACTGCTCACCTCAAATTCCAAAGAATGATAAACTAGTTCAAAGTCAAAACAANATACTTGATATTTCTTCTGGATTCTTGCATCTTGCTGGAGATTCATTGATACCTGAAACTATCAGTAAGAAATGCCTTGAGGATGCCAAAGTTCTCCATCAGGTGGATAAGAAATTCATTCCAATNGTGGCTGGCAGAACCCTTGCTGTTATTGATCAGCATGCTGCAGATGAAAGAATCAGACTAGAAGAATTGCGTCAAAAGGTATTATCTGGAGAAGCAAAAGCAATAACCTATCTCGATGCTGAACAGGAACTGGTGCTGCCGGAGATTGGTTATCAACTACTTCATAGCTACAGTGAACAGGTTAAAGATTGGGGCTGGATCTGCAACATCCATACTCAAAATTCCGAATCCTTTAGAAGGAATTTGGATACTCTCAACAGACAACAAATGACCACCACACTTATTGCGGTACCGTGTATTTTAGGTGTCAATTTAAATGATGTTGATCTGTTAGAATTTCTTCAGCAGCTGGGTGACACTGATGGATCATCAACAATGCCACCCTCTGTTATACGAGTACTAAATTTGAAAGCGTGCAGAGGTGCAATTATGTTTGGAGATTCGTTGCTACCATCAGAATGTTCCCTNATAGTTGAAGAGCTAAAGCAAACATCACTTTGTTTCCAGTGTGCACATGGGCGACCTACAACTGTTCCTTTGGTCAACTTGGAGGCACTGCATAATCAAATAGCCAAGCCTGGATTGATGAATGATTCCTCAAGTGATGAGTGGCATGGATTACAAAGACGTGAAATAAGTATTGAACGTGCAACACAGCGTTTAAGTTCTGCTAGAGGAAATTGAGGTTTTAGAAGAAACTATAGTTGTTACTGTTACTAGTGTAGTGGGAATATAATTCGACAGAATTTTATTCTCAACTGCGAAACCGTGATCGAGTGTACAGCAACATTGAGGGAGTAAAAAAAATAAGGAAGCAACCGTCATACAACTTGTATTATGGATATTACTGTAACGCCATTTGATAAAATTTTGTGATAATAATAGATCGAATTAGAATGCAAACACACAAATACGCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00037	342039	352520	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006298 mismatch repair

GO:0007131 reciprocal meiotic recombination

cellular_component
GO:0032300 mismatch repair complex

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000037s00002648.1	PF08676.6	MutL_C	712	873	2.40E-09
Glyur000037s00002648.2	PF08676.6	MutL_C	765	926	2.70E-09
Glyur000037s00002648.3	PF13589.1	HATPase_c_3	24	137	1.10E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.032
SRR1783600	control	4.125
SRR1783602	moderate drought stress	5.037
SRR1811619	moderate drought stress	5.083

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.043
DRR006520	Root Summer glycyrrhizin high producing strain	9.778
DRR006521	Root Winter glycyrrhizin high producing strain	8.218
DRR006522	Root Winter glycyrrhizin high producing strain	8.121
DRR006523	Root Summer glycyrrhizin low producing strain	17.338
DRR006524	Root Summer glycyrrhizin low producing strain	16.878
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.718
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.732

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.092
SRR2868004	Drought Stress (root)	24.557
SRR2967015	Control (root)	22.566

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.889
SRR9715740	Leaf	5.329
SRR9715741	Leaf	5.980
SRR9715739	Root	0.413
SRR9715742	Root	4.253
SRR9715743	Root	3.475

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.392
SRR8749028	MeJA induced 9h	5.487
SRR8749029	MeJA induced 9h	4.139
SRR8749030	Uninduced	3.187
SRR8749031	Uninduced	1.477
SRR8749032	Uninduced	1.448

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	8.021
SRR8400027	Control - Root	9.053