Gene detail

Gene detail information of Glyur000037s00002643.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G17530.3	2.00E-164	Protein kinase superfamily protein
NR	XP_004512277.1	0	PREDICTED: SRSF protein kinase 1-like [Cicer arietinum]
COG	YP_004584373.1	2.00E-12	serine/threonine protein kinase with PASTA sensor(s) [Frankia symbiont of Datisca glomerata]
Swissprot	tr\|P51568\|AFC3_ARATH	2.00E-39	Serine/threonine-protein kinase AFC3
trEMBL	tr\|G7K189\|G7K189_MEDTR	0	Serine/Threonine kinase family protein {ECO:0000313\|EMBL:AES95328.1}

Sequence

Transcript Sequence

>Glyur000037s00002643.1
AAAGTGATCAATGTCACGTGTAATTACTAGTGTAACCAAAGCAAAAAGCCAAAGGGGGAAGGAAGATGAATGGAATGAAATGAAGGGGGTAGCAATGTAATAAAGAAAATGGGGAGCGTGATGAAAAATGGAAGACCCACGTTCACAACAGCTAACAACATCACATGAAGGAATTAGGAAAAAGAAAAGAAAAGAAAAGGAAAAGACAGGAAAACGCAGAGAGANAAAAGTGGAGAAATTGAAGAGAGAGTGTGATTGATTCGCAACACACCACAAAAATAGGCTACAATATTAAAAACACACTCCCACCTCCCAATCAAATAATACTTCACATCCAAGCAATTCCCCAACCTGAAAAAACAAAAACAACACAATAATAAGAATAACAAACAAAAAACCCGAAATCATCATTGGCAATTCCGAAAGTAAAACAAAATTTGATTTTTTTCTCTCTATATTTTGTGCAATTGGTGAATCTGAATAGATAGATAAGAAGGAGGGTGATGTCGTGCTCGTCGTCATCGGGGTCGGAGGAAGATGATGAGGGCTTCGAGTCCTACAGAAAAGGAGGGTACCACGCCGTGAGGGTCGCCGATCAGTTCGCCGGCGGCAGGTACATAGCTCAGAGGAAACTCGGTTGGGGTCAATTCTCCACCGTCTGGCTTGCTTATGATACTAACACCTCTTCATATGTTGCTCTCAAAATCCAGAAAAGTGCGGCCGAGTTTGTTCAGGCTGCCCTTCATGAGATTGATGTTCTTTCATCCATTGCTGAAGGTGACCCATCAAATTCAAAGTTTGTTGTCCAATTGATTGACCACTTTAAGCACACGGGTCCAAATGGGCAGCACCTTTGCATGGTCCTCGAGTTTCTTGGTGATAGCTTGCTTCGTTTGATCAGATATAACCGTTACAAAGGTCTTCCATTGAGTAAAGTTAGAGAGATTTGCAAATACATTTTGACTGGTTTGGATTACTTGCACAGCAAACNTGGTATAATCCATACTGACCTAAAACCTGAAAACATTCTTCTATTTTCAACCATTGATCCTGCCAAAGACCCTTTTAGATCTGGACTCTCCCCAACTCTAGAGAAGCCTGAGGGAAACACAAATGGTGGACTCACAAGTCTTATTGAGAAAAGGTTGAAGAGAAGAGCAAAGAGGGCAGTTGCTAAGATATCAGGAAGAACAGCTTCAATTGAAGGAACAGGAGAAGATGTGAAGTCTGGTAAAAATATTGATGGGATTGACGTGAGATGCAAGATAGTCGATTTTGGAAATGCATGTTGGGCTGATAAGCAGTTTGCAGAAGAAATACAGACAAGGCAGTATAGAGCTCCTGAAGTCATACTGAAGGCTGGCTATTCCTTCTCTGTTGACATGTGGTCTTTTGCTTGCATTGCTTTTGAGCTTGCCACTGGAGATATGCTATTTACTCCCAAAGGTGGACAAGGTTTTAGTGAGGATGAGATTGCTATTGCTGGAGCTCAATCCAAGGATTTCTTTGATAGGCATGGTGATCTAAAAAGGATTCGAAGGCTAAAATTCTGGCCACTTGACAAACTGCTGGTTGATAGATACAAATTTTCAGTGAATGATGCTCGTGAGTTTTCAGAATTTCTTTTGCCACTTCTTGATTTTGNGCCGGAAAAGCGACCAACTGCACGACAGTGCCTGCAACACCCATGGCTGAACTGCAAGGAGTCATCAACCCCAAATGAGATGAGAAATGAGTCTACTACTGTGGAAAAGGTGAATGTTGGGATGAGCAACCTTAAAATCAAGGTGGGAAAGTGAAAGGGTGAATGAAAAATGTGTTTTTGACATAGTCCCAAGTCAAAGTCACATACTTTAAGCCCCTCCTTCCACATGAATGACTATTGATTGTGATTTATTTTATATTTTTTTTGCTTTGTTCNATTTTAATAAGATTCTTTCAATTGGATTTATTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00037	322603	327401	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.7

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000037s00002643.1	PF00069.20	Pkinase	40	397	1.20E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.561
SRR1783600	control	12.108
SRR1783602	moderate drought stress	8.494
SRR1811619	moderate drought stress	8.878

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.715
DRR006520	Root Summer glycyrrhizin high producing strain	13.458
DRR006521	Root Winter glycyrrhizin high producing strain	12.434
DRR006522	Root Winter glycyrrhizin high producing strain	11.947
DRR006523	Root Summer glycyrrhizin low producing strain	12.672
DRR006524	Root Summer glycyrrhizin low producing strain	13.396
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.298
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.448

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	31.784
SRR2868004	Drought Stress (root)	34.705
SRR2967015	Control (root)	31.053

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.331
SRR9715740	Leaf	14.509
SRR9715741	Leaf	16.129
SRR9715739	Root	2.255
SRR9715742	Root	10.659
SRR9715743	Root	8.007

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.667
SRR8749028	MeJA induced 9h	5.718
SRR8749029	MeJA induced 9h	4.727
SRR8749030	Uninduced	7.893
SRR8749031	Uninduced	6.384
SRR8749032	Uninduced	3.968

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.008
SRR8400027	Control - Root	28.476