Gene detail

Gene detail information of Glyur000037s00002639

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51470.1	7.00E-121	Protein phosphatase 2C family protein
NR	KHN35948.1	0	Hypothetical protein glysoja_003071 [Glycine soja]
COG	YP_003709340.1	2.00E-14	serine/threonine PP2C protein phosphatase [Waddlia chondrophila WSU 86-1044]
Swissprot	tr\|Q9SD02\|P2C47_ARATH	7.00E-173	Probable protein phosphatase 2C 47
trEMBL	tr\|I1LIC2\|I1LIC2_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA11G09220.1}

Sequence

Transcript Sequence

>Glyur000037s00002639.1
ATGGCACCAGGGAGTTGTGGTTGCAACACCTCTGAATCTGATCAGGCAACTACAATGAGTAGTGGTGGGTCCCCTCAGGGCAGTAGTGAGTGCTCCATGGAGGATCAGAATGGTGATACGGTGGGGAATTTGAATCAGAATATTGGGAAACCTCCAAGGGACCTTTCTGTTATGCGCCATTGCAGCAGCTCTTCATGGTTGGCTGAATCGGAATCAAATATTAATACTATTGGTCTTAAATCAAACACAGAAGAAAAATCAGAGTTTTCACTTGTATTGCGATCTGGAAGCTGTTCTGATAAAGGGCCAAAGCAGTACATGGAGGATGAGTTTATATGTGTTGATATTCTTCGTGATTGTGTTGGTCCACGAGCTGATGACCTCCCTTCTCCAGCAGCATTTTATGGGGTATTTGATGGACATGGTGGTATTGATGCAGCATCATTTATCAGAAAGAACATCCTCAAGTTTATAATTGAAGATCCNCATTTCCCATCTGGCATCAAGAAAGCAATTAAGAGTGCATTTGTGAAGGCTGATAATGCATTTAGAGATGCTAGTTCTCTTGACAATTCTTCTGGCACCACTGCTCTAACAGCCCTTGTGTTGGAAAGGGGCAGAGCCATTGACCTTTCTAAAGACCATAAACCAAATTGCACTTCTGAAAGATTAAGAATTGAGAAACTGGGTGGTGTCATCTATGACGGGTACCTCAATGGCCAGCTATCAGTGGCTCGTGCTTTGGGAGATTGGCACATCAAAGGTGCCAAAGGTTCTAAAAGCCCCCTGAGCTCTGAGCCTGAACTGGAGGAGATCGTGTTGACNGAAGAAGACGAGTTCTTGATAATGGGTTGTGATGGGTTATGGGATGTGATGAGTAGCCAGTGTGCTGTTACAATGGTGAGGAGGGAGCTTATGCAGCACAATGACCCCACCACATGTGCAAAAGTACTTGTTACTGAGGCCCTCCAACGTAATACATGTGACAATCTCACAGTTGTGGTGGTTTGTTTCTCTAAAGATCCACCCCCCAAGATTGAGATTCCTAGATCACACAGGAGGAGGAGTATTTCTGCTGAAGGCCTTGATCTTCTCAAGGGTGTCTTGAATGGTAGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00037	307650	309679	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006470 protein dephosphorylation

molecular_function

GO:0003824 catalytic activity

GO:0004722 protein serine/threonine phosphatase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000037s00002639.1	PF00481.16	PP2C	200	330	4.70E-41

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.186
DRR006520	Root Summer glycyrrhizin high producing strain	0.182
DRR006521	Root Winter glycyrrhizin high producing strain	0.099
DRR006522	Root Winter glycyrrhizin high producing strain	0.097
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.557
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.379

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.003
SRR2868004	Drought Stress (root)	13.350
SRR2967015	Control (root)	9.355

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.059
SRR9715740	Leaf	9.695
SRR9715741	Leaf	12.106
SRR9715739	Root	0.222
SRR9715742	Root	0.674
SRR9715743	Root	0.452

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.062
SRR8749028	MeJA induced 9h	0.229
SRR8749029	MeJA induced 9h	0.203
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.042

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.025
SRR8400027	Control - Root	2.821