Gene detail

Gene detail information of Glyur000037s00002638

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51480.1	0	glutamate receptor 3.6
NR	KHN35947.1	0	Glutamate receptor 3.6 [Glycine soja]
COG	YP_007133144.1	2.00E-24	amino acid ABC transporter substrate-binding protein, PAAT family [Stanieria cyanosphaera PCC 7437]
Swissprot	tr\|Q84W41\|GLR36_ARATH	0	Glutamate receptor 3.6 (Precursor)
trEMBL	tr\|G7K195\|G7K195_MEDTR	0	Glutamate receptor {ECO:0000256\|PIRNR:PIRNR037090}

Sequence

Transcript Sequence

>Glyur000037s00002638.1
TGAAGGACAGAGTCCCCACCCACCCCCAAAGTCCAGAAATTCACACCATAAACNAGGTGTTTTGTACAGTGACAATTATCTTCAAATCCTATTGAAGNCCAATTTTCCCCACATGAGGCTGCATTTCAGTGGCCACTGACATAAGCTATAGAATTGATGAGGCATGCCAAGGGTCACTTTTGCCCATACAAATNAAAAAGGACAAGGGGAACAAGAATCTCATCCCACTCACTAGTGAGAGTAGCATTAGTTTTTATATGGACAATATTTTTCATCACCAAACATTACAATTAGCCTTACCCTTTTAAAGTTTATTCATTAATTATCCCTTTTGTTCCCTCAATTTTCCTATTCTTTTCTTCAGTGCCCAGGCTTTCCATAATGCTTATGGCCTTGTTCTGCNCCTTCTTTAGGTTCCTTCTTCATGTGTTGTAATTCACGGTCANTGGTTATAAAGTTCATCTTTTTATTCTCAAAAGTTGAACCAAGCTTCACTTTTTCTGCAAAGTTTTTCTGCTTTATATTGACGCCACCCCATATCTTGTGATCCTACCAGGTAACTCATCCAACCATGATTAAAGTTTGGCTTTTGGCTTTAATGATTCTCTACAATGGCTTCTCTTCAACTGGGGCTGGCATCCATAATAATTCCACAATACCTGATTTTGTAAATATTGGGGCTCTCTTCTCTTTCAATACTAGTGTTGGTATAATTATAAAAATCGCTATACAAGCTGCGGTTGAAGATGTGAATTCGGATCCAAATATTCTTGGTAAGACCAAGCTGAGGCTCTCACTTCAAGAGGATTCTAAATATAGAGGTTTTCTAAGCATTTCTGAAGTTTTGCAGGTCATGGCGAGCCACACCGTGGCAATAATTGGCCCCCATAGCTCTGTAACAGCTCATGTCATAACTCATATTGCAAATGAGCTCCAAGTTCCTCTGCTGTCATTTTCAGCTTTGGACCCCACCCTTTCTTCACTTCAATTCCCATTCTTCATTAGAACTTGTCACAGTGATCTTTATACAATGGCTGCAATAGCAGACCTTGTGGACTACTATGGGTGGAAGGACGTTATTGCTGTCTATATTGATGATGATAATGGGAGGAATGGAATCGGTGCATTAGGCGATAAGCTTGCTGAGAGACGTTGCAAGATCTCATACAAAGCACCTCTGAGCCCCGAAGCAAATCGGGAGGAGATTACAAATGTNCTTGTTCAGGTGGCTCTTGCGGAATCACGAGTTATAGTTGTTCATGCCAACACTGTTTGGGGCCCCAAGATATTTAGTGTNGCAAAGAATCTTGGGATGATGGGAACTGGGTATGTGTGGATAGCCACTGCTTTTCTCTCTGCTCTTCTTGAGATAAATAGTCCCCTACCTTCAGATACAATGGATGAAATTCAAGGAGTGTTAACACCGCGAATTTACACGCCAGATTCGGAGCTCAAAAGGAGGTTTGTTTCTAGGTGGAAAAACTTGACTCNTGGGGATACTGCTAATGGCCCTCTTGGAGTGAGCTTTTTATCTCTCTATGCATATGATACTGTTTATGNGCTTGCTCATGCACTTGATGCATTTTTCAAGCAAGGGAACCGAATTACGTTCTCAAATGATCCAAAGTTATCTGCACTACATGGAGACAACTTGCATCTTGATGCATTGAACATCTTTGATGAAGGGAATTTGTTACGTAGAAACATTTATGAGGTTAACATGACNGGTGTAACGGGTACATTCAAGTACACAAGTGATGGAAGCCTTGTTAATCCCGCGTATGAAATCATAAATGTGGTTGGAACCGGGTTCCGGAGGATCGGTTATTGGTCTAATTACTCTGGATTNTCAGTTGTTCCTCCAGAAGCTCTTTATTCCAAACCAGCCAATNAGTCCAGTGCAAATCAAAAGCTATTGCCTGTGATTTGGCCTGGAGAGACGGAGCAGAAGCCTCGTGGTTGGGTTTTTCCAAACAANGGAAGGCTTTTGAAAATCGGAGTACCGAAAAGTGTTAGTTACCGTGAATTTGTCTCACAAGTACCAGGCACTGATACGTTTCAGGGATTCTGCATTGATGTGTTTCTTTCTGCAGTTAACCTGTTGCCTTATGCTGTNCCCTATAAGTTCATCTCATATGGGGATGGTAAGAACAATCCTAGTATCACTGAGCTTGTGCGATTGATCACAACGGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTACAGTAAGAACAAAAACGGTGGATTTTACTCAGCCATATGTTGAGTCTGGTCTAGTGGTAGTAGCACCAGTTAGGGAGTCAGAATCCAGTGCTTTGGCCTTTTTGGCCCCATTCACGCCAAGGATGTGGCTTGTCACAGCTATTTTTTTCATATTAGTGGGAACTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGATTTTAGAGGACCACCCAAAAAACAAGTAGTTACTATTTTATGGTTTAGCTTTTCAACTATGTTCTTTTCCCACAGGGAGAATACAGTGAGCACACTTGGTCGCGTTGTGCTGCTTATATGGTTATTTGTAGTTCTCATAATTAACTCAAGTTACACGGCAAGTCTAACATCGATCCTCACAGTGCAGCAGCTTTCTTCTCCCATCAAAGGCATCGAGAGTTTGGTAAATAGCAAAGATGCTATTGGGTACATGCAGGGTTCTTTTGCTAAAAATTATTTAATCCAGGAAATTGGCATCGATGCAACCAGGCTTGTTCCTTTAAGAACACCTGAAGAAACTGCTAGAGCACTGAAAAAGGGTCCACAAAATGGTGGTGTTGCTGCTTACATTGCTGAGCGTGCCTATGTTGACATCTTCCTTTCAAGCCGGTGTGAATTTGCTGTTGTTGGTCAAGAGTTCACCAGAAATGGTTGGGGATTTGCNTTTCCACGAGACTCTCCATTAGCAGTTGACCTGTCAACTGCCATTTTGCAATTGATAGACAATGGAGACCTACAAAGGATCCATGACAAGTGGCTGTTGAGTAGAGCATGCCTNTCACAGGGTGCAAAGCAGGGAGTGGAAAGACTCAAATTGAAAAGCTTTTGGGGCCTCTACGTGATATGCGGTGCCGCATGCTTGCTTGCACTATTCATATATCTCATACAGATTGTGAGGCAGTACAGCAAGAACTACTCAGAGGAACCTNAATCTCCTGACACAAAAGACAACTCCGGATCAGGAGGATCTTCTTCTTCTTCTTCGCGTCTAAGGAGTTTCCTCTCCTTTGCAGACGAAAAAGAAGACACTGTTAAGAGCCGATCCAAGAGAAGGAAAATGGAGAGGATCTCTTACCGAGGCAGTGAGGGAGGATCATCCATCAACTCCAATAAAGAATATGCTCACACATCTTCATACAGCAACACAAGCGATTGTGCTACTAATAGGGTCTGACCTGACCAACTCACTTNTCACACGTGATGTTTTCTTTTTCAGTACATAATAATATGTATACTTGGTTAAATTAAAGTTATAGTTCCTACATGTGATTTTGATGTTTAACATGGTACTCTAATTGTACAAAAACAGTTTTATAAATTAGTCCTATGGCTATACATGTAGTTTTTAATTTTTAATATACTCACTGTAGTCTGTAGCCATGATAACACTCTAGTTACAAGCGACTCATGAATTATAATGTGATGTTAGTTTGTATTTGATTAATTGTTTTATCTTAAACGTGTAATCATTGTACATGATGCTCATTTTTAATGAAAAAAGTTTNCAGTTTGGTTCTCATACATGAAATTGTTCACTTCATGCCATGATGAGTTAAATGAAAAACTTTAATGCTTTCTATTCAATTCAGCAGCAGAAAGCAGAAAGCAAAAAGCACAAAAGCAATGAGCTAAATGAAAAACTTGTTATTTTGAATTAGGTTGAAGAGGTTTTCATTGGGTTAATAATGAATAATGTATGAACCTCATCCCCATAAAGATGAAAGCTGTGGTTCCAAAGCTTACATGTTAATTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00037	294668	300369	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

molecular_function
GO:0004970 ionotropic glutamate receptor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000037s00002638.1	PF01094.23	ANF_receptor	52	409	1.50E-67
Glyur000037s00002638.1	PF00497.15	SBP_bac_3	486	813	9.50E-21
Glyur000037s00002638.1	PF00060.21	Lig_chan	594	846	2.40E-35
Glyur000037s00002638.2	PF01094.23	ANF_receptor	52	409	1.30E-67
Glyur000037s00002638.2	PF00060.21	Lig_chan	555	769	4.00E-25
Glyur000037s00002638.2	PF00497.15	SBP_bac_3	593	736	1.30E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.111
SRR1783600	control	2.094
SRR1783602	moderate drought stress	7.313
SRR1811619	moderate drought stress	7.293

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.660
DRR006520	Root Summer glycyrrhizin high producing strain	6.175
DRR006521	Root Winter glycyrrhizin high producing strain	5.819
DRR006522	Root Winter glycyrrhizin high producing strain	5.703
DRR006523	Root Summer glycyrrhizin low producing strain	6.491
DRR006524	Root Summer glycyrrhizin low producing strain	6.743
DRR006525	Leaf Summer glycyrrhizin high producing strain	20.483
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.301

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.877
SRR2868004	Drought Stress (root)	10.004
SRR2967015	Control (root)	11.283

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.041
SRR9715740	Leaf	52.014
SRR9715741	Leaf	32.543
SRR9715739	Root	6.043
SRR9715742	Root	15.067
SRR9715743	Root	12.318

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.465
SRR8749028	MeJA induced 9h	0.066
SRR8749029	MeJA induced 9h	0.119
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.042

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.907
SRR8400027	Control - Root	6.095