Gene detail information of Glyur000037s00002619 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G18260.1 | 6.00E-07 | HCP-like superfamily protein |
| Swissprot | tr|Q9LM25|HRD3A_ARATH | 2.00E-07 | ERAD-associated E3 ubiquitin-protein ligase component HRD3A {ECO:0000305} (Precursor) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00037 | 168137 | 175183 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.797 |
| SRR1783600 | control | 2.467 |
| SRR1783602 | moderate drought stress | 8.636 |
| SRR1811619 | moderate drought stress | 5.289 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.153 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.591 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.895 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.470 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.257 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.097 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.909 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.010 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.650 |
| SRR2868004 | Drought Stress (root) | 3.407 |
| SRR2967015 | Control (root) | 2.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.687 |
| SRR9715740 | Leaf | 0.711 |
| SRR9715741 | Leaf | 0.762 |
| SRR9715739 | Root | 0.211 |
| SRR9715742 | Root | 0.605 |
| SRR9715743 | Root | 0.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.929 |
| SRR8749028 | MeJA induced 9h | 7.728 |
| SRR8749029 | MeJA induced 9h | 8.500 |
| SRR8749030 | Uninduced | 3.484 |
| SRR8749031 | Uninduced | 2.497 |
| SRR8749032 | Uninduced | 4.216 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 3.346 |
| SRR8400027 | Control - Root | 3.175 |