Gene detail information of Glyur000037s00002613 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G76520.2 | 1.00E-119 | Auxin efflux carrier family protein |
| NR | XP_003612431.1 | 0 | Auxin efflux carrier protein [Medicago truncatula] |
| trEMBL | tr|G7K2M6|G7K2M6_MEDTR | 0 | Auxin efflux carrier family protein {ECO:0000313|EMBL:AES95389.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00037 | 117975 | 122109 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000037s00002613.1 | PF03547.13 | Mem_trans | 13 | 410 | 5.50E-67 |
| Glyur000037s00002613.2 | PF03547.13 | Mem_trans | 13 | 410 | 5.50E-67 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.853 |
| SRR1783600 | control | 4.950 |
| SRR1783602 | moderate drought stress | 3.536 |
| SRR1811619 | moderate drought stress | 3.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.824 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.410 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.554 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.641 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.342 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.749 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.150 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 40.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 37.224 |
| SRR2868004 | Drought Stress (root) | 27.776 |
| SRR2967015 | Control (root) | 33.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 142.164 |
| SRR9715740 | Leaf | 203.115 |
| SRR9715741 | Leaf | 122.183 |
| SRR9715739 | Root | 7.007 |
| SRR9715742 | Root | 4.202 |
| SRR9715743 | Root | 4.166 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.553 |
| SRR8749028 | MeJA induced 9h | 18.047 |
| SRR8749029 | MeJA induced 9h | 3.534 |
| SRR8749030 | Uninduced | 13.059 |
| SRR8749031 | Uninduced | 8.718 |
| SRR8749032 | Uninduced | 5.964 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.204 |
| SRR8400027 | Control - Root | 35.287 |