Gene detail information of Glyur000037s00002612.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38180.1 | 0 | FAR1-related sequence 5 |
| NR | XP_003538916.1 | 0 | PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Glycine max] |
| Swissprot | tr|Q9SZL8|FRS5_ARATH | 0 | Protein FAR1-RELATED SEQUENCE 5 |
| trEMBL | tr|I1LIE2|I1LIE2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G09400.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00037 | 110700 | 115149 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000037s00002612.1 | PF03101.10 | FAR1 | 84 | 133 | 1.10E-05 |
| Glyur000037s00002612.1 | PF10551.4 | MULE | 231 | 319 | 1.90E-22 |
| Glyur000037s00002612.1 | PF04434.12 | SWIM | 505 | 538 | 1.30E-09 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.507 |
| SRR1783600 | control | 6.352 |
| SRR1783602 | moderate drought stress | 7.503 |
| SRR1811619 | moderate drought stress | 7.331 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.407 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.222 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.781 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.192 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.726 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.932 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.721 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.142 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.655 |
| SRR2868004 | Drought Stress (root) | 17.969 |
| SRR2967015 | Control (root) | 19.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.319 |
| SRR9715740 | Leaf | 10.688 |
| SRR9715741 | Leaf | 9.086 |
| SRR9715739 | Root | 3.437 |
| SRR9715742 | Root | 11.529 |
| SRR9715743 | Root | 11.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.927 |
| SRR8749028 | MeJA induced 9h | 7.295 |
| SRR8749029 | MeJA induced 9h | 2.940 |
| SRR8749030 | Uninduced | 3.047 |
| SRR8749031 | Uninduced | 0.997 |
| SRR8749032 | Uninduced | 1.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.968 |
| SRR8400027 | Control - Root | 14.481 |