Gene detail

Gene detail information of Glyur000037s00002607.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06740.1	1.00E-60	Concanavalin A-like lectin protein kinase family protein
NR	XP_004512301.1	0	PREDICTED: probable L-type lectin-domain containing receptor kinase S.5-like [Cicer arietinum]
COG	NP_864945.1	2.00E-12	glucosesorbosone dehydrogenase [Rhodopirellula baltica SH 1]
Swissprot	tr\|Q9FG33\|LRKS5_ARATH	2.00E-69	Probable L-type lectin-domain containing receptor kinase S.5 (Precursor)
trEMBL	tr\|G7K2N4\|G7K2N4_MEDTR	0	Lectin receptor kinase {ECO:0000313\|EMBL:AES95397.2}

Sequence

Transcript Sequence

>Glyur000037s00002607.1
TTCGTAGAAAACAAAAACAAAGCCAATCACAGGTCATTAAAATCACACACTACAGCACCTCCACAACTTGATTTTCCTAATTTCCTCACCGGAAGAAAGAATTTAACAAAAAAAGGAGAACTAATTAACTAGCTAATTAAGCTAGTAAGTAACACAGTAAGTAGCAATAACACGCCATGCTTCCACCCCAGTGCCGCCGCCGCCACAAGGCTGACATGTTCTACCTCACCACCGCCATCGGCATTCTCCTCCTGTTCCCGGCGGCGACATCCCAAGCCCAGATTCTCAAACCAGAGACCCACGTGCTAGGTCCCTTCAATCTCACCGACACCAACCTCCTCGACGTGATACCCTCCGCTACCATCAACCTCGGCGCCCTCCAAGTCACCCCCGACAGCGCCGGCAGCACCTCAGTGGTATCCCTCTTCAACAAATCCGGCAGAGTATTCCTCAAAAAACCCTTCACCCTCTGGAACGACGAAGAAAAACTCGTTTCCTTCAACACCTCGTTCCTCATCAACGTGTTCCGCGTGAACAATGGAACCCCCGGCGAGGGCCTCGCTTTCGTTATCGCTCCTTCTCTTTCCATCCCTCTCAACAGTTCNGGCGGTTACCTCGGTCTAACTAACGCCTCAACCGACGGAAACGTCACCAACCGTTTCGTCGCCGTCGAACTTGACACCGTCAAACAGGACTTCGACCCCGACGACAACCACATGGGTCTCGACATTAACGGCGTCAATTCCAACGTCACCGTTCCCTTGACCCCTCTCGGCTTCGAGATCGCACCCAACGGAACACAGTTCTACGTTCTGTGGGTTGAATACGACGGNGACCGGAAGTTGTTGGAGGTTTACATGGAGGCCCANTCTTCCNCCGATGAGCCCATAGTGGATAAGCCCAATAAGCCCATTTTGAGTTCGGGTCTCGATCTCAGAGCATTGGTGAGTCAGAGATCCTATTTTGGGTTCTCTGCTTCCACCGGTGACACCGTTGAGTTGAACTGTGTGCTTAGGTGGAACATATCCATCGAGGTTTTCCCTGATGAGAAGGGAAACAGTGAAAACGCNTTGAGGATTGGTTTGGGTGTTGGGGTGTCNCTGTTGGTTTTGCTTGTGGGTGGTNGTTTTGGGTTTGGGTATTACANGTGTAGGAAGAAGAGGGGAAGTGCTTCTGACCCTATGATTTTGGGGNCACTCAAGAGCTTACCGGGTACACCGAGAGAGTTCAAGTTCCAGGAACTGAAGAAGGCCACTAACAATTTTGATGAAAGGCACAAGCTTGGACAGGGTGGGTACGGTGTCGTTTATAAGGGGACACTCCCTAAGGAGAAGATGGAAGTGGCGGTTAAGATGTTCTCCAGGGATAAGATGAAGAGTACCGATGATTTCTTGTCNGAGCTCATCATTATCAATCGCCTCCGTCACAAACATTTAGTTCGTTTACAAGGATGGTGCCACAAAAACGATATATTGCTCTTAGTATACGACTACATGCCCAATGGTAGCCTGGACAACCACATATTCTGTGAGGAAGGGACAAGCACTACCCCACTAAAGTGTTTCCACACTGGAAAGGCAACACGTGAATCAGATGTGTATGGTTTTGGAGCTGTACTACTAGAAGTTGTGTGTGGCCAAAGACCATGGACAAAGATTGAAGGGTATCAGCTATTGGTGGATTGGGTNTGGCATTTGCATCGTGAGGGGAGGATATTGGAGGCAGTGGATCAAAGACTTGGTAATGAGTATGTGGGTGAAGAGGCAGAGAGGGTATTGAAATTGGGACTTGCATGCTCTCACCCCATTGCAAGTGAGAGGCCTAAGATGCAAACAATAGTTCAGATCATATCTGGGTCAGTGAATGTGCCTCATGTTCCACCTTTCAAGCCAGCTTTTGTTTGGCCAGCTGTGGATCTTGGAAGCCTTGCAAGTGACCTCACAGGAACAACAACAACTACTTCCACTGAGTACACACCAATGTTCAATAGCACCAACACCCAATCTTCTTTGCACGTTGAATTCTCAGATAACAGCTCTCAGGTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00037	82918	86337	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.11.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04733	IRAK4	EC:2.7.11.1	NF-kappa B signaling pathway	map04064
			Toll-like receptor signaling pathway	map04620
			Toll and Imd signaling pathway	map04624
			NOD-like receptor signaling pathway	map04621
			Neurotrophin signaling pathway	map04722
			Pertussis	map05133
			Tuberculosis	map05152
			Measles	map05162
			Influenza A	map05164
			Toxoplasmosis	map05145
			Leishmaniasis	map05140
			Chagas disease (American trypanosomiasis)	map05142

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000037s00002607.1	PF00139.14	Lectin_legB	57	283	2.10E-54
Glyur000037s00002607.1	PF07714.12	Pkinase_Tyr	366	449	1.20E-17
Glyur000037s00002607.1	PF07714.12	Pkinase_Tyr	459	557	0.00011

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.498
SRR1783600	control	16.686
SRR1783602	moderate drought stress	9.725
SRR1811619	moderate drought stress	10.083

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.812
DRR006520	Root Summer glycyrrhizin high producing strain	32.656
DRR006521	Root Winter glycyrrhizin high producing strain	2.953
DRR006522	Root Winter glycyrrhizin high producing strain	3.073
DRR006523	Root Summer glycyrrhizin low producing strain	96.757
DRR006524	Root Summer glycyrrhizin low producing strain	95.007
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.336
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.570

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.426
SRR2868004	Drought Stress (root)	76.111
SRR2967015	Control (root)	124.609

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.926
SRR9715740	Leaf	9.981
SRR9715741	Leaf	43.202
SRR9715739	Root	45.167
SRR9715742	Root	111.527
SRR9715743	Root	96.928

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	47.830
SRR8749028	MeJA induced 9h	60.853
SRR8749029	MeJA induced 9h	46.133
SRR8749030	Uninduced	75.657
SRR8749031	Uninduced	52.599
SRR8749032	Uninduced	37.691

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.038
SRR8400027	Control - Root	53.169