Gene detail

Gene detail information of Glyur000037s00002605

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G14130.1	2.00E-103	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_003612446.1	0	1-aminocyclopropane-1-carboxylate oxidase [Medicago truncatula]
COG	YP_553500.1	2.00E-21	putative oxidoreductase [Burkholderia xenovorans LB400]
Swissprot	tr\|Q7XKU5\|DAO_ORYSJ	1.00E-108	2-oxoglutarate-dependent dioxygenase DAO
trEMBL	tr\|G7K2P1\|G7K2P1_MEDTR	0	Gibberellin 2-beta-dioxygenase {ECO:0000313\|EMBL:AES95404.1}

Sequence

Transcript Sequence

>Glyur000037s00002605.1
ATGGAGGAGACTATTCCAGTGATTGATCTTGAGAAGATTTCAGAGCAAGAGGAGTGCAAGAAGCTAAGAGAGGCATGTGAGAAATGGGGTTGTTTCAGGATAATTAACCACTCTATTCCTTTGACCCTCATGGGGGAGATGAAGATGGTGGTTGGGGCTCTACTTGACCTTCCAATGGAGATCAAGAAGCGCAACAAAGAAGTCATTGCTGGCAGCGGTTACATGGCACCAAGTGCTATCAATCCTCTCTATGAGGCTTTGGGCCTCTATGACTTGGGTTCCTCACAAGCTGTGCAGGACTTCTGCTCTCAATTGGATGCCACACCCCATCAAAGGTTTTTTGTTTTTGCATATGGGAGAGCAATTCATGATTTGGCAGTGAAAATAGGACAAAAGATGGCTGAATCTCTAAGCATAGTGGGTGCTGATTTCGAGGATTGGCCATGTCAATTCAGAATTAACAAATATAACTTCACCCCAGAATCTGTAGGGTCCCCTGGAGTTCAACTGCACACAGATTCAGGGTTCCTAACCATTCTTCAAGATGATGAAAATGTTGGTGGTCTTGAAGTGATGATGGACAATTCTGGCTCATTTGCGTCAGTCCCTCCATTACCAGGAACCCTCCTTGCCAATCTTGGAGATATTGCTCATGTATGGAGCAATGGAAGGTTTTGCAATGTGAAGCACCGTGTAGAATGCAAGGAAGCCACTACACGTTGGTCAATTGCGACATTTATGTTGGGACCCAGGAAGGGAAATGTAGAGACCCCAGCAGAGGTGGTGGACCATGATCACCCACGTTTATATCAACCTTTTATTTATGAAGATTATAGGAAGCTCAGAGTCTCCAAGAAGATGCACGCTGGTGAAGCCCTTGAGCTGCTACGCTAGCTTGGCCTAGTGATTGGAACAAGGATTTTGGGAAAATTAATTAGGACCCCACTTTTCGGAAATTTATAGGGCCATGTCTTTGTTAATTTGCCTTTGCCAATTAAAAATAAACATTTGTGTTGAAATTAAGAGNGGTGGGGTGGTTATATATTGCTAAGTGATCACGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00037	77003	79040	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000037s00002605.1	PF14226.1	DIOX_N	5	75	4.20E-15
Glyur000037s00002605.1	PF03171.15	2OG-FeII_Oxy	149	247	5.60E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	19.938
SRR1783600	control	20.054
SRR1783602	moderate drought stress	14.322
SRR1811619	moderate drought stress	14.270

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.194
DRR006520	Root Summer glycyrrhizin high producing strain	5.218
DRR006521	Root Winter glycyrrhizin high producing strain	0.405
DRR006522	Root Winter glycyrrhizin high producing strain	0.405
DRR006523	Root Summer glycyrrhizin low producing strain	12.112
DRR006524	Root Summer glycyrrhizin low producing strain	11.702
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.499
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.575

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	39.552
SRR2868004	Drought Stress (root)	37.126
SRR2967015	Control (root)	39.777

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.644
SRR9715740	Leaf	24.936
SRR9715741	Leaf	15.379
SRR9715739	Root	18.057
SRR9715742	Root	4.251
SRR9715743	Root	7.811

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	91.195
SRR8749028	MeJA induced 9h	128.484
SRR8749029	MeJA induced 9h	92.642
SRR8749030	Uninduced	106.462
SRR8749031	Uninduced	95.912
SRR8749032	Uninduced	115.737

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	41.728
SRR8400027	Control - Root	35.904