Gene detail

Gene detail information of Glyur000037s00002601

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G45880.1	4.00E-117	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	XP_004512306.1	0	PREDICTED: jmjC domain-containing protein 7-like [Cicer arietinum]
COG	YP_632582.1	2.00E-12	JmjC domain-containing protein [Myxococcus xanthus DK 1622]
Swissprot	tr\|Q8RWR1\|JMJ30_ARATH	2.00E-13	Putative lysine-specific demethylase JMJD5
trEMBL	tr\|V7CL84\|V7CL84_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW30050.1}

Sequence

Transcript Sequence

>Glyur000037s00002601.1
ATTTTCATTTCATGATCGAGTGTATACTATTTTCAAACCATGCGCGGGGGAATGCTTTCTTCTTGCATATTGAAAAGGAAGATGCAATTGCAATTGCAATTGCAAACTCACACACGCTGATCGTTTTCATTCCAAGTGATCATCACAACAGCAATATCATGGTGATGGAGGAGGAGATAGAGGGACTGTGGAGGGAAGTGAGGGAGGTGAGCTTAGGAAGCAGTGGAAGAGTAGAGAGATTGGAATCCCCACCAANCCCATTGGAATTCCTGAGAGACTTCATCAACCCAAACAAGCCCTGCATCATCTCCAACGCCATCTCCCACTGGCCAGCACTCTCTTCCTGGCCCCACCACTCCTACCTCACCGAAACCCTCTCCTCCTCCACCGTCTCCCTCCACCTCACCCCCACCGGCGCCGCCGACTCCCTCACCCCTCTCTCCCCCTCCTCCTCACTCTGCTTCGCCTCCGCGCACGTGCAGCGCGTGCCTTTCACCGACGCCCTCCGCCTCATCTCCTCCTCCCACCCCTCCAAGCGCGTGGCCTACGCGCAGCAGCAAAACGATTGCTTCCGCTCCGAGTACTCTTCCCTCGCCGGTGACTGTGACCCCCNCATTGGTTGGGCCACNGAAGCCTTTGGCGNGTTGCCTGAAGCTGTTAACCTCTGGATTGGTAACGAACACTCTCACACTTCCTTCCACAAGGATCACTACGAGAATCTCTACGCTGTTGTCACTGGGGAGAAGCACTTCCTCTTGTTGCCTCCCACTGATGTTCATCGCTTGTACATTCGTCACTACCCTGCTGCTACTTACACTTATTCTTGGGATACTGGGGAGTTCGATTTGGAGCTTGAGAAGCCAACGAGGTATGTGCCTTGGTGCAGTGTGGACCCTTATCCTTCTCCGGAGACCTTGGATGATGAGATTTCCAAGTTCCCCTTATACTTCAAAGGCCCTCGCCCCTTTGAGTGTACCGTGAAGGCCGGGGAGATTCTCTACCTGCCGAGCATGTGGTTCCATCATGTTAGACAGAGTGGGGATGATGGAGGATTAACCATTGCAGTAAACTATTGGTATGATATGCAGTTTGACATTAAGTATGCTTATTTCAACTTTTTACAATCTATAGATTACCGATCTCCTCAAAGTCCAATGGTGCATGAGAAATTGTCTGAGGAGATAGATTCTCCTCAAAGCCCTGATGATGATAATTACACTAGTAGATGAATTCTCATTTCTNAGCCGGTGCGATATTTGGCAATGTGGGGGCTTCAAGAAAATGCTGAAGACCGAAAAAGTCNAGGCCACTTGAGCAAAAACATTTAACAGAAACAGTGTGGGGGAAACATTATTTCCCAAACCAACGCAGATATTCGCTTGCTGTTGACTTGTGCCAATACAATTTTGTCCTTCATTTTGTATCATAAGATATGACATCAATTACCCGTTACCGTTTTCTTTTCCCTCTTTCTGGTGGGGGTGCTGTAATAGTCATGTTGAGGAAACTGTCCCAAACAAACACCTACTTTTTCTCCGTTGGATTCTTCCAATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00037	50605	53329	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000037s00002601.1	PF13621.1	Cupin_8	84	361	2.00E-71

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.932
SRR1783600	control	8.111
SRR1783602	moderate drought stress	6.896
SRR1811619	moderate drought stress	6.948

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.432
DRR006520	Root Summer glycyrrhizin high producing strain	8.350
DRR006521	Root Winter glycyrrhizin high producing strain	3.652
DRR006522	Root Winter glycyrrhizin high producing strain	3.569
DRR006523	Root Summer glycyrrhizin low producing strain	6.305
DRR006524	Root Summer glycyrrhizin low producing strain	6.069
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.902
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.844

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.260
SRR2868004	Drought Stress (root)	5.019
SRR2967015	Control (root)	6.200

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.765
SRR9715740	Leaf	5.957
SRR9715741	Leaf	4.924
SRR9715739	Root	5.710
SRR9715742	Root	4.972
SRR9715743	Root	4.927

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.943
SRR8749028	MeJA induced 9h	1.550
SRR8749029	MeJA induced 9h	1.700
SRR8749030	Uninduced	0.239
SRR8749031	Uninduced	0.099
SRR8749032	Uninduced	0.185

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.541
SRR8400027	Control - Root	13.242