Gene detail information of Glyur000037s00002596.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G19170.1 | 0 | nine-cis-epoxycarotenoid dioxygenase 4 |
| NR | AES95419.2 | 0 | carotenoid cleavage dioxygenase 4a-6 [Medicago truncatula] |
| COG | NP_485149.1 | 2.00E-84 | hypothetical protein all1106 [Nostoc sp. PCC 7120] |
| Swissprot | tr|O49675|CCD4_ARATH | 0 | Probable carotenoid cleavage dioxygenase 4, chloroplastic (Precursor) |
| trEMBL | tr|G7K3Y7|G7K3Y7_MEDTR | 0 | Carotenoid cleavage dioxygenase 4a-6 {ECO:0000313|EMBL:AES95419.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00037 | 40494 | 42251 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K09840 | NCED | EC:1.13.11.51 | Carotenoid biosynthesis | map00906 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000037s00002596.1 | PF03055.10 | RPE65 | 110 | 575 | 1.30E-128 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.963 |
| SRR1783600 | control | 6.196 |
| SRR1783602 | moderate drought stress | 5.541 |
| SRR1811619 | moderate drought stress | 5.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.157 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.810 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.381 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.619 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.244 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.661 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 685.393 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 682.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.560 |
| SRR2868004 | Drought Stress (root) | 5.140 |
| SRR2967015 | Control (root) | 5.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 274.941 |
| SRR9715740 | Leaf | 544.657 |
| SRR9715741 | Leaf | 144.619 |
| SRR9715739 | Root | 14.193 |
| SRR9715742 | Root | 5.399 |
| SRR9715743 | Root | 7.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.018 |
| SRR8749028 | MeJA induced 9h | 0.190 |
| SRR8749029 | MeJA induced 9h | 0.225 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.947 |
| SRR8400027 | Control - Root | 12.854 |