Gene detail

Gene detail information of Glyur000036s00004691

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G53480.1	ARM repeat superfamily protein
NR	XP_006584778.1	PREDICTED: importin subunit beta-1-like [Glycine max]
Swissprot	tr\|Q9FJD4\|IMB1_ARATH	Importin subunit beta-1 {ECO:0000305}
trEMBL	tr\|I1KPN2\|I1KPN2_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G02930.1}

Sequence

Transcript Sequence

>Glyur000036s00004691.1
TTTAACATTGGCGTCTCTGCTTTTTCCCACACTCTGCTAGGGTTTCAGAGTCGCCGCGCTTCTTTGAGTTTCTCTTTGCTTCGACTCGCTCCTCACTCACTCACTCTTCACTCCATCGCCGATTCCATTCCTTAACTCGCCGTTCAGATGGCTATGGAGGTTACTCAAATTCTTTTAAATGCGCAAGCAGTGGATGGTGCTGTAAGAAAACAAGCTGAAGAAAGCCTGAAACAGTTTCAGGAACAGAACCTTCCAAGTTTCTTGTTTTCTCTTGCTGGGGAATTGGCAAATGATGAAAAGCCTGCAGAGAGTAGGAAGCTTGCAGGTTTGATTCTCAAGAATGCTCTGGATGCAAAAGAACAGCACAGAAAGATAGAATTTGTTCAAAGATGGCTGTCATTGGATCCAACTTTGAAAGCCCAGATTAAAGCATTCCTGTTGAGGACCCTTTCTTCTCCTTCAATTGATGCTCGATCGACTGTATCACAAGTTATTGCAAAAGTTGCTGGTATTGAGTTGCCTCACAAGCAATGGCCGGAATTGATAGGATCCCTCTTGTCAAACATTCACCAGCTTCCTGCCCCAACAAGGCAGGCAACTCTTGAGACCCTTGGGTACATTTGTGAAGAAGTATCCCCAGATGTGGTAGAGCAGGATCATGTAAATAAGATACTCACTGCAGTTGTTCAGGGAATGAATTCTACAGAAGAAAACAATGATGTTAGGCTTGCTGCAATACGGGCATTGTACAATGCATTGGGTTTTGCTCAGGCAAATTTTTCTAATGATATGGAGCGGGATTACATAATGCGAATTGTCTGTGAAGCAACCCTTTCTCCTGAACTGAAGATTCGTCGAGCTGCTTTTGAGTGTTTGGTAGCTATTTCTTCTACATACTATGAAAAGTTGGCTCCTTATATCCAAGATATCTTCAACATCACTGCTAAAGCAGTGAGGGAAGATGAGGAGCCTGTCGCACTTCAGGCAATTGAGTTCTGGAGTTCAATATGTGATGAAGAAATTGATATATTAGAAGANTATGGAGGTGATTTTAGTGGGGATTCAGATATTCCTTGTTTTTACTTTATCAAGCAGGCACTTTCATTTCTTGTTCCTATGTTATTGGAGACGCTGCTGAAGCAAGAAGAGGATCAAGATCAGGATGAGGGAGCTTGGAACATTGCAATGGCTGGAGGTACATGCTTGGGATTGGTTGCACGAACAGTTGGTGATGATATTGTGCCTTTGGTTATGCCATTTATTGAAGAGAACATAACTAAACCAGATTGGAGGCAACGAGAAGCTGCAACTTATGCGTTTGGCTCCATTCTGGAAGGACCATCCCCTGACAAACTTGTGCCACTTGTAAATATGGCTTTGAACTTCATGCTCACTGCACTGATGAAGGATCCAAATAATCACGTGAAGGACACTACAGCATGGACTCTTGGACGAATGTTTGAGTTTTTGCATGGGTCAGCTTTGGATACTCCCATCATCACTCAGGCAAACTGCCAGCAGATTATTACTGTGCTTCTTCAGAGCATGAAAGATGTTCCAAATGTTGCTGAGAAGGCATGTGGTGCTCTTTATTTTCTTGCCCAAGGTTATGAGGATGCTGGATCTGCGTCCTCTCCATTAACCCCCTTCTTTCAAGAAATTGTTCATGCTCTTCTCACTGCAACACATAGAGAGGATGCTGGAGAATCCCGCCTTAGAACAGCAGCCTATGAAGCCTTAAATGAAGTAGTGAGGTGTTCTAATGATGAAACGGCTCCGATGGTGGTACAACTTGTTCCTCTGATCATGATGGAGCTCCACCAGACTCTTGAAAATCAGAAGGTCTCATCAGATGAGAGGCAGAATGAGTTACAAGGTCTTCTCTGTGGTTGCTTGCAAGTCATCATACAGAAGCTAGGATCATCTGAACCAACGAAATATCATTTCATGCAGTATGCTGACCAAATTATGAGTTTATTCTTAAGAGTGTTTGCTTCTCGAAGTGCAACAGCTCATGAGGAGGCTATGCTTGCCATCGGAGCTTTGGCCTATGCAGCTGGTGCTGATTTTGCTAAATACATGCCAGAATTTTACAAGTATATGGAGATGGGTCTCCAAAATTTTGAGGACTACCAGGTATGTGCCATCACAGTTGGTGTGGTTGGTGATGTATGCAGGGCTTTAGAGGAGAAAATACTACCTTATTGTGATGGGATAATGACCCAACTTCTTAAGGATTTGTCAAGCAATCAGTTGCATAGGTCCGTCAAGCCTCCGATTTTTTCATGTTTTGGTGACATTGCCTTGGCAATTGGAGAAAACTTTGAAAAGTACTTGTTATATGCCATGCCGATGCTTCAAAGTGCTGCTGAGCTCTCGGCTCATACTGCTGGTGCTGATGACGACATGACAGAGTACACAAATTCTTTGAGAAATGGAATCCTTGAGGCATACTCAGGGATCTTCCAAGGATTCAAAGGTTCCCCAAAGACCCAGCTCCTGATGCCTTATGCTCCTCATGTACTGCAATTCTTGGACAGTTTGTACATGGAGAAGGACATGGATGATGTTGTGACTAAGACAGCAATTGGTGTGCTTGGAGATTTAGCTGATACTTTGGGTAGTAATGCTGGCCCCTTGATTCAGCAATCTGTGTCCAGCAAAGACTTCCTCAAAGAGTGTTTATCATCTGATGATCATTTGGTCAAGGAATCTGCCGAATGGGCCAAGNTGGCAATCAGTCGAGCAATTTCATTTTGAGGCTATTGCTATTTCAATGGGTCCTAGTTCTTGCATACATCTGCATTGTTGCGTGGGGGTCTCAAGTGCATACCATGAGTCGGGTCATCACCATTTTTGGGCACAGGTGTTTCGGTCCTTTGGCTGTCTGCATTTCATGTCAGCAATATGGAGTCTGTTTTTTCCATTTTTTTTTAAAATTTGTTGTTCTGCATTGCTATGGAGGAAGTCGGTGGGTGATGACCAATCTACCTGCTAACTTGGCAGAAAAGATGCGGTTTTTTCATACAGAAGGAGAAACAGGGTTTAAATTGGGGTAGGAGAGGAGTAGAAAAAGGAGATATCCCATGATATCTGCCAATACCGTCTCTATTGAGCTTGCATGAGTTATTATTTGAATGTTTGGAGTCTATGGTGGTCCAGAATATGACATTATGTCCTTTTCTTTCTTTCTTTTCCCTTTTNACTATTGGCTGTAGAGTGAAACAATCATCTTTAGTCCGTCCATGTGTTTGAAACACAGGTAATGCAACATATTTTAGCCGTTCCTTGCAATTACTCAAACAACTGCGTTTTCCCGTATCAAAATTTATTATTATTAAGTTTNGTATGGATTTTTGTGTTTCACGGGACGTGTTATCATGTTTTCTGGGTAGTTCGTATGAGTGTCAGCAGGTGGGGGGTGTAACGCGTTTTTTCCGCTGTTAAAGTAAAAGACCTTTTGTGGTGGCAGGCGGAGGTTTTTACGTGGTCGTTATTTGTTTGAAATTTCGTGGCCACAAGAAGCAAATTGTCGGTTCGCACGCGGGTATGGAATTTGAAGCTGATCCAGTTCCAATCCGATTAAATAATAGGGTTTTGTTTGTACTATTTTTCTTTTACGTTTTTCTTTAGCTTACCTTTGTCAAAAACAAAAATTAAATATTTTCATGTACAAGAATTCTTTAAATTGAATGAATTTTTCAATTGTCCAGCTCAGCAATTGTTTGAATCTTTTAATTTTAAAGGAAATTAAGAAAATGTATGAAAGCTGTTCACAGTTCAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00036	506701	511630	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006886 intracellular protein transport

molecular_function

GO:0005488 binding

GO:0008536 Ran GTPase binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000036s00004691.1	PF03810.14	IBN_N	23	102	1.90E-15
Glyur000036s00004691.1	PF13513.1	HEAT_EZ	381	437	1.10E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	34.472
SRR1783600	control	34.708
SRR1783602	moderate drought stress	28.328
SRR1811619	moderate drought stress	28.127

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	46.594
DRR006520	Root Summer glycyrrhizin high producing strain	45.893
DRR006521	Root Winter glycyrrhizin high producing strain	24.034
DRR006522	Root Winter glycyrrhizin high producing strain	23.679
DRR006523	Root Summer glycyrrhizin low producing strain	45.968
DRR006524	Root Summer glycyrrhizin low producing strain	46.145
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.062
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.907

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.634
SRR2868004	Drought Stress (root)	43.543
SRR2967015	Control (root)	39.545

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	46.697
SRR9715740	Leaf	36.373
SRR9715741	Leaf	37.888
SRR9715739	Root	53.748
SRR9715742	Root	104.746
SRR9715743	Root	94.025

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	78.772
SRR8749028	MeJA induced 9h	53.235
SRR8749029	MeJA induced 9h	32.936
SRR8749030	Uninduced	29.439
SRR8749031	Uninduced	10.015
SRR8749032	Uninduced	10.874

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	42.843
SRR8400027	Control - Root	44.179