Gene detail

Gene detail information of Glyur000036s00004690.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G23920.1	1.00E-116	beta-amylase 1
NR	XP_003532447.1	0	PREDICTED: beta-amylase 1, chloroplastic-like isoform X1 [Glycine max]
COG	YP_004639880.1	2.00E-27	beta/alpha-amylase [Paenibacillus mucilaginosus KNP414]
Swissprot	tr\|Q9LIR6\|BAM1_ARATH	7.00E-145	Beta-amylase 1, chloroplastic (Precursor)
trEMBL	tr\|K7L4L5\|K7L4L5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G02920.3}

Sequence

Transcript Sequence

>Glyur000036s00004690.1
CTGTAAATAAGCATAAAGGAACATAATCTCTCCTCCACACCCTGGAAGGAGTGCAGTGTAGCTGTATGCATTCAGCACTGCTTCACCACACTCTCATCACTCTACTGTTACTACAAATTATGTGACATTTTCTTCTTGTCTGTTTTCGTAGTGCAGAAATTGAAACCCTAACTCTGCAATTTCCCAATCNATGGCGATCCCTTCTCACTCCACCGCAAGCTTCTCCCCATCCTTCATCTCCAATCGGAACGATTTGACTCATCTAACTCGCCTCCCCTGCCGCGTCACCTTCACTCAGCTCCGCAGAAACCAATCCCGTCGACCCGCCATCTCTTCGCGTCTCAACTCGTCCAANTCCTCCGATGCCGGTGGCTTCGTTTACCCGGACAACGGCGACGCCCCCTACGAGCTCCACCACGATCTCTCGCCGCAGCGCCGGAGGCGCGGATCGCCGGTGTTTGTCACGCTCCCCGTGGATTCCGTCGGCGTGGAGGGGAAGATTCGGAGGCCCAAAACCATGANGATGTCGCTCAGGGCGCTCGCCGCGGCGGGGGTAGAAGGCGTGGCGGTGGAGATTTGGTGGGGTTTGGTTGAGAGGAATGAGCCTAGGGTGTATGATTGGAGAGGGTATCGNGAACTCTTCGTGATGGCTTGCATGTGTGGCCTCAAGGTTCGAGCTGTTCTTGCGTTCCATCAACAAGGCACAGGCCCTGATGACCCTAATTGGATACCACTTCCTCTATGGGTGCTTGATGAGATACGTAAAGATCCAGAGTTTGGAAGAAGAAATATTGAATACATTTCCCTTGGATGTGATACTCTTCCTGTGCTATGTGGACGTTCTCCCATTCAAGTATATGCAGATTTTATGAGGGACTTCAGGGACACTTTCAGGACTTTACTTGGTGTTATCATTACAGGAGTACAGATTGGCATGGGTCCTGGTGGTGAACTAAGATATCCTTCATTCTCTTTCAAAAAGCCAAATTTGGCTTGGCCTCATGAACTTGGAGAGTTTCAGTGCTATGATAAGTATATGCTTGCTTCTCTAAATGCCGCTGCAAGAAAAATTGGAAAGCGTGAATGGGGAAATGGTGGTCCATTTGGTACTGGAAGTTTGATGCAAAATCCCGACGATACTGAATTCTTTAGAAATGAGGGTGGCTCTTGGAACACACCATACGGTAAATTTTTCCTCAAATGGTACTCAGATATGCTGCTACTGCATGGAGAGAGAATATGTAGGGAAGCTGAAACTATATTTAGGGGTACGGAAGTCCATATATCAGCAAAATTGGCTGCCATTCACTGGCACTATGTCACACAATCCCATCCATCGGAGTTAACAGCAGGCTATTATAATACTTTTTACAGGGACGGATACTTGCCAATTGCGCGCATCTTTAGCAAATATGGATTCTCGATGTGCTGCTCTTGTTTTGAAATGCAAGATGCAGTTATGAAGAAGATGAATCCAGATGGCAGCCCTGAAGGTTTTCTTAGACAGCTTTTGCTGGCTGCTAGGCTCTGTGACATATCACTTGAAGGTCAAAATTTTTCAACTGATTTAGATGATGATGCATTCACCCAGGTGTTGAAGATGTCAAAATTTTACTCGAACGGGATTGAGAAGCGCCCCTTCTCATTCAACTTTGTAAGAATGGACAAAAAAATGTTTGAATCAAGAAATTGGGATCGTTTTACTCGATTCGTGAGGCNAATGTCTGGTGGAAACATTTTTCGAGCCAGATTAAATTCTGTGGGTGAGATACGATTGAAGACTAGACGAGTGGCTGCAGAAGTGGGACTGTTGTACCAGCTATACCAGCACTCTTGAAACTAGTTTCAGCCTCTGTTTTAGAAGGCATAAATATATTTTAATATTATCACCATCACTGCATGAAGTCCACTGTTGTGAAATGTGTAGCAACTGCTGATTCTTGGCATGATTCTTTTATTGCTTTTCGGCAACTAGTTACTTCTTCAAANCACCACATTACATTGCCTTCCAGATTTTTTTATACGGGTGGCATGTAATCCACTTGTGCCTATATATTTCGAATAGACCCAGATACAATCTTGAAACCAGATAGATGCTGTTGGGATGTTAGTTCTTCACGGCCGTCCCTTTTAATCTTCTGTTATATAACTTTATGGTGTATATCTTTGAGCAGATTGTCTGTTTGGATTTCAAACGAGTGTACATTTACCATCGATCTTATTATATTACGTTTTGGTGTTGTAACCTTTGTTTAAAAAGCCATTGGCCTCTGTGCCTTACACGTTATTTTTGTAACCNAGGGAATTGAGGGGATTTGCTTATCTCATTTGGGATTTACTTGCAAAATCGTTGCTTATATCAGATGAGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00036	501808	505633	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH14

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01177	E3.2.1.2	EC:3.2.1.2	Starch and sucrose metabolism	map00500

Gene Ontology

biological_process

GO:0000272 polysaccharide catabolic process

GO:0005975 carbohydrate metabolic process

molecular_function
GO:0016161 beta-amylase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000036s00004690.1	PF01373.12	Glyco_hydro_14	90	507	2.40E-84

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.727
SRR1783600	control	16.652
SRR1783602	moderate drought stress	14.346
SRR1811619	moderate drought stress	14.489

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.651
DRR006520	Root Summer glycyrrhizin high producing strain	15.367
DRR006521	Root Winter glycyrrhizin high producing strain	9.784
DRR006522	Root Winter glycyrrhizin high producing strain	9.472
DRR006523	Root Summer glycyrrhizin low producing strain	24.057
DRR006524	Root Summer glycyrrhizin low producing strain	23.445
DRR006525	Leaf Summer glycyrrhizin high producing strain	14.522
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.456

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	15.949
SRR2868004	Drought Stress (root)	18.676
SRR2967015	Control (root)	19.043

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	17.099
SRR9715740	Leaf	19.733
SRR9715741	Leaf	16.902
SRR9715739	Root	11.740
SRR9715742	Root	17.975
SRR9715743	Root	16.137

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.232
SRR8749028	MeJA induced 9h	10.864
SRR8749029	MeJA induced 9h	11.363
SRR8749030	Uninduced	10.876
SRR8749031	Uninduced	3.956
SRR8749032	Uninduced	2.960

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.992
SRR8400027	Control - Root	17.767