Gene detail

Gene detail information of Glyur000036s00004686

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G10840.1	1.00E-92	Tetratricopeptide repeat (TPR)-like superfamily protein
NR	XP_003525334.1	6.44E-174	PREDICTED: nephrocystin-3-like [Glycine max]
COG	YP_004385194.1	4.00E-12	TPR-repeat-containing protein [Methanosaeta concilii GP6]
trEMBL	tr\|I1K675\|I1K675_SOYBN	2.00E-174	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G36660.1}

Sequence

Transcript Sequence

>Glyur000036s00004686.1
ATGAGCCTCCACGTCCTCGCCGCCATCTACTGCAGCCTCGGCCGCTTCGACGACGCCGTACCCGTCCTCGAACGCGCCATTCAGGTCCCCGACGTCTCCCGCGGCGCCGACCACGCCCTCGCAGCATTCTCCGGCCACATGCAGTTGGGCGACACGTTCTCCATGCTCGGCCACGTCGACAGATCCATCTCCTGCTACGACCAGGGCCTCCAGATCCAGATCCAAACCCTAGGCGAAACCGATCCACGCGTCGGCGAAACCTGCCGGTACCTTGCGGAGGCCAATGTTCAGGCGATGCAATTCGATAGAGCCGAGGAGCTATGCAAGAAAACCCTAGAGATTCACCGTGCTCACAGCGAACCCGCGTCGCTCGAAGAAGCCGCCGATCGGAGACTCATGGCTCTCATTTGCGAGGCCAAGGGAGATTACGAATCGGCGCTTGAGCACCTCGTTCTTGCGAGCATGGCCATGATCGCCAACGGACAGGACAACGAGGTTGCCTCCATTGACGTCAGCATCGGAAACATCTACATGTCGTTGTGGCCGATTCGACGAGGCAATCTTCTCCTATCAGAAGGCGCTCACAGTGTTCAAATCCTCCAAGGGCGAAAACCACCCTTCCGTTGCGTCGGTATTCGTGCGCCTCGCCGATTTGTATCACAGGACAGGGAAGCTTCGGGAGTCCAAGTCGTATTGCGAGAATGCGTTGAGGATATACTCCAAGCCGGTGCCGGGGACCACCGCGGAGGAGATCGCGGGCGGGCTGACGGAGCCGGAGGAGGCGCTGAAGCTGTTGCAGCGGGCGATGAAACTGTTGGAGGACAAGCCTGGGCAGCAGAGCACGATCGCCGGGATAGAGGCACGGATGGGGTGATGCATTACATGGTTGGGAGGTATGATGAATCGAGAAGTGCATTCGAGAGCGCGGTGGCGAAGCTCAGGGCCAGCGGGGAGAGGAAGTCCGCGTTCTTTGGGGTGGTTTTGGACCAGATGGGGTTGGCGTGTGTGCAGCTGTTCAAGATAGATGAGGCTGCTGAGTTGTTTGAGGAAGCCAGGGGAATTCTTGAACAGGAGTGTGGCCCTTGTCACCAGGACACTCTCGGAGTATACAGTAATCTTGCAGCTACTTATGATGCCATGGGAAGGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00036	493657	494835	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000036s00004686.1	PF13176.1	TPR_7	2	27	0.00037
Glyur000036s00004686.1	PF13424.1	TPR_12	47	116	1.30E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.689
SRR1783600	control	35.297
SRR1783602	moderate drought stress	46.173
SRR1811619	moderate drought stress	44.088

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	36.535
DRR006520	Root Summer glycyrrhizin high producing strain	35.060
DRR006521	Root Winter glycyrrhizin high producing strain	17.907
DRR006522	Root Winter glycyrrhizin high producing strain	18.880
DRR006523	Root Summer glycyrrhizin low producing strain	30.608
DRR006524	Root Summer glycyrrhizin low producing strain	27.001
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.407
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.278

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.543
SRR2868004	Drought Stress (root)	26.734
SRR2967015	Control (root)	27.347

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.880
SRR9715740	Leaf	13.411
SRR9715741	Leaf	12.667
SRR9715739	Root	29.068
SRR9715742	Root	34.963
SRR9715743	Root	35.019

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.765
SRR8749028	MeJA induced 9h	6.787
SRR8749029	MeJA induced 9h	5.376
SRR8749030	Uninduced	2.433
SRR8749031	Uninduced	0.526
SRR8749032	Uninduced	2.544

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.921
SRR8400027	Control - Root	30.733