Gene detail information of Glyur000036s00004683 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10840.1 | 0 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004503588.1 | 0 | PREDICTED: nephrocystin-3-like [Cicer arietinum] |
| COG | YP_004385194.1 | 7.00E-30 | TPR-repeat-containing protein [Methanosaeta concilii GP6] |
| trEMBL | tr|A0A072U605|A0A072U605_MEDTR | 0 | Kinesin light chain {ECO:0000313|EMBL:KEH21270.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00036 | 479252 | 481682 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000036s00004683.1 | PF13176.1 | TPR_7 | 129 | 154 | 0.00064 |
| Glyur000036s00004683.1 | PF13424.1 | TPR_12 | 173 | 243 | 2.00E-08 |
| Glyur000036s00004683.1 | PF13424.1 | TPR_12 | 292 | 368 | 1.50E-13 |
| Glyur000036s00004683.1 | PF13424.1 | TPR_12 | 464 | 535 | 5.30E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 73.143 |
| SRR1783600 | control | 73.389 |
| SRR1783602 | moderate drought stress | 78.173 |
| SRR1811619 | moderate drought stress | 68.379 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 63.576 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 62.367 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 36.850 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 36.154 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 52.897 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 62.715 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.921 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 31.617 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 98.447 |
| SRR2868004 | Drought Stress (root) | 94.500 |
| SRR2967015 | Control (root) | 88.019 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 52.068 |
| SRR9715740 | Leaf | 52.864 |
| SRR9715741 | Leaf | 51.801 |
| SRR9715739 | Root | 97.298 |
| SRR9715742 | Root | 109.375 |
| SRR9715743 | Root | 107.738 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 42.681 |
| SRR8749028 | MeJA induced 9h | 24.139 |
| SRR8749029 | MeJA induced 9h | 25.238 |
| SRR8749030 | Uninduced | 12.194 |
| SRR8749031 | Uninduced | 6.438 |
| SRR8749032 | Uninduced | 7.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 98.451 |
| SRR8400027 | Control - Root | 120.872 |