Gene detail information of Glyur000036s00004666.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G10925.3 | 3.00E-97 | Nuclear transport factor 2 (NTF2) family protein |
| NR | XP_007160182.1 | 6.81E-175 | hypothetical protein PHAVU_002G299800g [Phaseolus vulgaris] |
| COG | YP_003796738.1 | 2.00E-11 | hypothetical protein NIDE1052 [Candidatus Nitrospira defluvii] |
| Swissprot | tr|Q93YV9|SKIP8_ARATH | 3.00E-122 | F-box protein SKIP8 |
| trEMBL | tr|V7CTG0|V7CTG0_PHAVU | 3.00E-175 | Uncharacterized protein {ECO:0000313|EMBL:ESW32176.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00036 | 397179 | 400158 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000036s00004666.1 | PF13474.1 | SnoaL_3 | 177 | 290 | 9.40E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.994 |
| SRR1783600 | control | 8.758 |
| SRR1783602 | moderate drought stress | 16.755 |
| SRR1811619 | moderate drought stress | 16.521 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.937 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.624 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.499 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.411 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.904 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.844 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.875 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.857 |
| SRR2868004 | Drought Stress (root) | 7.283 |
| SRR2967015 | Control (root) | 7.887 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.149 |
| SRR9715740 | Leaf | 6.334 |
| SRR9715741 | Leaf | 6.760 |
| SRR9715739 | Root | 5.344 |
| SRR9715742 | Root | 5.720 |
| SRR9715743 | Root | 5.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.616 |
| SRR8749028 | MeJA induced 9h | 13.655 |
| SRR8749029 | MeJA induced 9h | 12.959 |
| SRR8749030 | Uninduced | 5.768 |
| SRR8749031 | Uninduced | 8.474 |
| SRR8749032 | Uninduced | 8.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 8.169 |
| SRR8400027 | Control - Root | 7.175 |