Gene detail information of Glyur000036s00004665 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23940.1 | 0 | FtsH extracellular protease family |
| NR | KHN16731.1 | 0 | ATP-dependent zinc metalloprotease FTSH 2, chloroplastic [Glycine soja] |
| COG | YP_002729572.1 | 6.00E-92 | ATP-dependent metallopeptidase HflB [Sulfurihydrogenibium azorense Az-Fu1] |
| Swissprot | tr|O78516|FTSH_GUITH | 3.00E-86 | ATP-dependent zinc metalloprotease FtsH {ECO:0000255|HAMAP-Rule:MF_01458} |
| trEMBL | tr|I1KPL2|I1KPL2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G02780.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00036 | 388847 | 396057 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000036s00004665.1 | PF00004.24 | AAA | 457 | 574 | 3.70E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.194 |
| SRR1783600 | control | 11.432 |
| SRR1783602 | moderate drought stress | 8.727 |
| SRR1811619 | moderate drought stress | 8.903 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.469 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.338 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 12.462 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.067 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.686 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.671 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 16.858 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.811 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.077 |
| SRR2868004 | Drought Stress (root) | 11.142 |
| SRR2967015 | Control (root) | 12.472 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 17.102 |
| SRR9715740 | Leaf | 30.731 |
| SRR9715741 | Leaf | 17.441 |
| SRR9715739 | Root | 4.455 |
| SRR9715742 | Root | 11.604 |
| SRR9715743 | Root | 10.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.600 |
| SRR8749028 | MeJA induced 9h | 9.086 |
| SRR8749029 | MeJA induced 9h | 6.467 |
| SRR8749030 | Uninduced | 4.079 |
| SRR8749031 | Uninduced | 3.733 |
| SRR8749032 | Uninduced | 3.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 25.674 |
| SRR8400027 | Control - Root | 24.316 |