Gene detail

Gene detail information of Glyur000036s00004663.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G10940.1	2.00E-64	RING/U-box protein
NR	XP_004503607.1	0	PREDICTED: uncharacterized protein At4g10930-like [Cicer arietinum]
Swissprot	tr\|Q8L7I1\|Y4193_ARATH	0	Uncharacterized protein At4g10930
trEMBL	tr\|K7KRW1\|K7KRW1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G36785.3}

Sequence

Transcript Sequence

>Glyur000036s00004663.1
ATGGAAGCGGATTTCGCGACGGATGGTATGCTCACATTCACGGAGGATCCATTTGATGCCAACGATACTGATAATGTAGATATTGAAGGGGAAAGGTGTGGAATATGCATGGACATTGTTATTGACCGGGGAGTTCTGGATTGCTGTCAGCACTGGTTCTGCTTTGTATGCATAGACAACTGGGCTACCATCACTAATCTCTGCCCACTTTGCCAGAATGAGTTTCAGTTGATCACTTGTGTTCCAGTATATGATACCATAGGAAGCAATAAAGTTGAGGATGACTTATCCTTCAGAGATGATGACTGGTCCATTGAAGAGAAGAACAGCACCCTATCATTTCCCTCTTACTACATTGATGAAAATGCAGTTGTTTGCTTGGATGGTGATGGCTGCAAAGTTCGAAATGGATCATCAAGTATTGAAGGAGATTCTGATCTTGATACATCAATTGCTTGTGATTCATGTGATATATGGTATCATGCCTTCTGTGTGGGATTTGATACTGAAGGTACATCTGACAGTACATGGCTATGCCCAAGATGTGTGGNTGAGGAAGTTTCTAAAGGAACAGCTACCAATTCAATAGAGAAGGCAGCTGTGGAATGTAGTCCAGATAGTAGTAATAGTGAATGTCATGCTAAGGATTCCTTTTCAGGAAAAGTGTCTGTGTCCATTGCTGATACTGGAGAGACAGCTGTTGTTATCTCAATGGTTGACAGAAATAAATGGGTTCCAGCAAAAAGCGAGAAAGGCCTATTGCCTNTTGAAGTTGATGGGGATCTGCTGACTGAATCATGCAATTTAATGTCTGACACAAATAATCAGCTGCCGGGGACAGAGAAGACGACTATGTCACCAGTCATGGAGGGAGAAGAACTGGAGCTGTCCTTATCACATGATATGTCCTGTAATCTAACTTCTAAATCATTGGTACATAATGATTTAAAGAAAAGTGATAATGGAGCAAGAAGTGAACCATGTAGCTTTGATGGAACCAAGTTATTTGATGAGTCCCATGTTAAAACTAGTCCGTCCAAAATTGAATCTGATATGGGTCTTCATCTTGTTGATAATGCGGACGAGAGTGAGACAAAAGATCAAGTAACTGGTGTCCTACACTTGACTCCCGAAGAATTTCTTTTGAAAGGAGATGAAATTGAAGCCACTGCTTGTAAGGACAATGCCAGAGTGACAGGTGAAAAGAGGAAGCATGTTGATTACTGTCACGAGCAAGGTCATATAAAAGCTGATGATGGAGATGGCAAGTCTGAACTTTTGGTTGAAGTTTCACAAAAGAAAATTAGAGCAGCTGGTAGTCAAATGATTTGTTCTAATGACTCAGTCGATGCTTATCTTTCTGACAATGCTAAAATAANCCCTGCTTTAAAATGTTCTCCTACAAAGGAGATTGTGGCATCAGATATAATGAATATAGTTAAAGGGACGAACCGTAGGCTTTCCAAGGGACTTGCTGACACTAATGCTCNTGAAAAGTTAGCTGAAAAGAAAGAAAATATGGCTGGATTAAGGGTTAAAAAGATTATGAAGAGAGCTTCTGATGATGGAGAATCATCCTTGGTGGTCCAAAATCTTAGGAAGGAAATTAGAGAAGCTGTCCGTAACAAATCCTCTATAAACTTTGACGAAAACCATTTTGATAAGAAGCTTCTTGAGGCATTTAGGGCTGCTATAACAGGGCCTAAAACTGAACCTGTAAATAAGTTATCCCCTTCAGCTGTAAAGGCAAAGAAGTCAATGATGCAGAGAGGAAAAGTACGTGAAAATCTAACAAAGAAAATTTTTGGGACTTCCAATGGAAGAAGAAAGCGTGCATGGGATAGGGACTGTGAAATTGAGTTTTGGAAATATCGTTGCATGAGAGCTACAAAGCCTGAAAAGATTGAAACTTTAAAATCAGTTCTTGATCTACTAAGAAAAAGTTCAGAGAGCCCAGAATCAGAGCAAGCTCCTGAATGTCAGGCCAAAAATCCGATTCTTTCCAGATTGTATTTAGCAGATACATCTGTTTTCCCACGGAAAAACGATGTCAAACCTCTCTCTGTGCTTAAAACCATTGCTAGTTCAGAGCATACTAAACAAAATAACCCATCAGGAAAAGGACCAAATCTATCTCTTGATAACGATACTACTAAAACAACAGAGGTAGATAATCTTTTATCAAAGACCAGAGTTTGTTCATCTGAAAAAAATGTAGATAAGAAGATTGTACATGGTCNAGTTTGTGATAATTCAGCTTCTGGTAAAGCACATTTAAGCAGTCACTCAGATGGGACATCAGTTTCTTCTTCAGCTCGTGCCAAAGTTGGCACAAAGAAGTCAGGCCTTAAATCTGATTCTGTGAAGACTGATAAAAGAAAATGGGCCATGGAAGTTCTTGCGAGGAAAACAGCTGCTGCAAACAGGAACTCAGCAAATGAAAGTCAAGAAGACAATGCAATTTTTAAAGGAAATTATCCTTTGCTTGCCCAATTACCAACTGATATGAGACCAGTGTTGGCACCTTGTCGCCACAATAAAATTCCTGTATCAGCGAGGCAGACACAGCTTTACCGCCTGACAGAACGTTTATTGAGGAACACAAATCTGCCGGTCATTCGCAGAACTGCGNATACAGAATTGGCTGTTGCAGATGCAGTTAATATTGAAAGGGAGGTTGCTGACAGATCAAACAGCAAGCTTGTGTATCTGAACCTTTGTTCACAAGAGCTCTCACATCGCACAAATAACACAAAATCCAATGTATCCACAGATACAAGTCCACCAGCCTCATCATCAGTGCATACTGATCAATCAGAACTAAATACTGGTGATCTTTCAACTGACCCTGCAGTTCAAATAGCCTTGAAAGATGCTGGTCTATTGTCTGATTCTCCGCCTAGCAGTCCACATAAGAAAGAAGAGACACCGAATGAAGATATGTCAGGGCCTGATAATATACTTGAACTGGATTCTCATTCCGAGCTGGATATTTATGGTGATTTTGAGTATGATTTGGGAGATGAAGATTACATTGGTTCTAGCATTACAAAGGTCTCAAACCCAAAACAGGAGCAAAGTGAATCAAAAGTGAAACTTGTTTTCTCCACCATGAACATGAAGAAAACAAATAATACTTTGGATTGTGCAGACCCTAAGGGGTCTGAAAACAATGTAGTGCCAGGAGATGCCTCTTGCTCACCAAGCNGTCACAATGATGCAGTCCACAAGGATTCTACAATTGATGCAGAGATTGNCCAGCCTTCTGTTTCTTCCGAGCTCCTACCATGTGAGGGTGCTGTTGAGCCAGTCGATTCAGAAGTTGAAGAATTATACGGCCCTGATAAAGAACCACTTATAAAAAAATTTCCAGATGGTGAATCAAGACCATTACGTGAAGAGGACAAGACAGAAACCCAAATTGAGGCTAATGATTGTCATAAGGACGAAAAACATGTCTTAGACAAAGCAATAGATGCTTCTGAATCCGGGAAATCTGAGACTGATGAAAATTTCCAAAGGAAGGAGGAGAAATCTGACANCCCTGCTCAGCAGTCCAACAATGTAAATCATGTAGCAAGGAAGGTAGAAGCGTACATCAAGGAGCATATCAGGCCATTGTGCAAGAGTGGTGTGATCACGGCTGAACAATACAGGTGGGCTGTTGCAAAAACAACTGATAAGGTTATGAAGTATCATGGCAAATCAAAGAATGCTAATTTCCTCATAAAGGAAGGTGAGAAAGTAAAGAAACTCGCGGAGCAAAACTTGCTTTATTGGGCTGATGTGGATAGATTTCGCCACGGCTCATCAGCAATATGTGAAAATGGAGCACACAATGGGGATTGA

Protein Sequence

>Glyur000036s00004663.1
MEADFATDGMLTFTEDPFDANDTDNVDIEGERCGICMDIVIDRGVLDCCQHWFCFVCIDNWATITNLCPLCQNEFQLITCVPVYDTIGSNKVEDDLSFRDDDWSIEEKNSTLSFPSYYIDENAVVCLDGDGCKVRNGSSSIEGDSDLDTSIACDSCDIWYHAFCVGFDTEGTSDSTWLCPRCVXEEVSKGTATNSIEKAAVECSPDSSNSECHAKDSFSGKVSVSIADTGETAVVISMVDRNKWVPAKSEKGLLPXEVDGDLLTESCNLMSDTNNQLPGTEKTTMSPVMEGEELELSLSHDMSCNLTSKSLVHNDLKKSDNGARSEPCSFDGTKLFDESHVKTSPSKIESDMGLHLVDNADESETKDQVTGVLHLTPEEFLLKGDEIEATACKDNARVTGEKRKHVDYCHEQGHIKADDGDGKSELLVEVSQKKIRAAGSQMICSNDSVDAYLSDNAKIXPALKCSPTKEIVASDIMNIVKGTNRRLSKGLADTNAXEKLAEKKENMAGLRVKKIMKRASDDGESSLVVQNLRKEIREAVRNKSSINFDENHFDKKLLEAFRAAITGPKTEPVNKLSPSAVKAKKSMMQRGKVRENLTKKIFGTSNGRRKRAWDRDCEIEFWKYRCMRATKPEKIETLKSVLDLLRKSSESPESEQAPECQAKNPILSRLYLADTSVFPRKNDVKPLSVLKTIASSEHTKQNNPSGKGPNLSLDNDTTKTTEVDNLLSKTRVCSSEKNVDKKIVHGXVCDNSASGKAHLSSHSDGTSVSSSARAKVGTKKSGLKSDSVKTDKRKWAMEVLARKTAAANRNSANESQEDNAIFKGNYPLLAQLPTDMRPVLAPCRHNKIPVSARQTQLYRLTERLLRNTNLPVIRRTAXTELAVADAVNIEREVADRSNSKLVYLNLCSQELSHRTNNTKSNVSTDTSPPASSSVHTDQSELNTGDLSTDPAVQIALKDAGLLSDSPPSSPHKKEETPNEDMSGPDNILELDSHSELDIYGDFEYDLGDEDYIGSSITKVSNPKQEQSESKVKLVFSTMNMKKTNNTLDCADPKGSENNVVPGDASCSPSXHNDAVHKDSTIDAEIXQPSVSSELLPCEGAVEPVDSEVEELYGPDKEPLIKKFPDGESRPLREEDKTETQIEANDCHKDEKHVLDKAIDASESGKSETDENFQRKEEKSDXPAQQSNNVNHVARKVEAYIKEHIRPLCKSGVITAEQYRWAVAKTTDKVMKYHGKSKNANFLIKEGEKVKKLAEQNLLYWADVDRFRHGSSAICENGAHNGD

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00036	375550	385857	+

Gene family

Gene family	subfamily
Transcription Factors Family	PHD
Ubiquitin Family	RING

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0008270 zinc ion binding

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000036s00004663.1	PF00097.20	zf-C3HC4	33	71	0.00013
Glyur000036s00004663.1	PF00628.24	PHD	145	183	1.20E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.258
SRR1783600	control	8.354
SRR1783602	moderate drought stress	9.785
SRR1811619	moderate drought stress	9.743

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.385
DRR006520	Root Summer glycyrrhizin high producing strain	11.080
DRR006521	Root Winter glycyrrhizin high producing strain	9.990
DRR006522	Root Winter glycyrrhizin high producing strain	9.779
DRR006523	Root Summer glycyrrhizin low producing strain	12.459
DRR006524	Root Summer glycyrrhizin low producing strain	12.459
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.761
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.775

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.597
SRR2868004	Drought Stress (root)	11.493
SRR2967015	Control (root)	11.664

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.337
SRR9715740	Leaf	8.638
SRR9715741	Leaf	7.669
SRR9715739	Root	0.627
SRR9715742	Root	5.540
SRR9715743	Root	5.398

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.641
SRR8749028	MeJA induced 9h	17.777
SRR8749029	MeJA induced 9h	8.930
SRR8749030	Uninduced	14.671
SRR8749031	Uninduced	18.509
SRR8749032	Uninduced	11.067

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.526
SRR8400027	Control - Root	9.969