Gene detail information of Glyur000036s00004658 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G23930.1 | 1.00E-51 | Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family |
| NR | KEH21238.1 | 8.50E-123 | late embryogenesis abundant hydroxyproline-rich glycoprotein [Medicago truncatula] |
| trEMBL | tr|A0A072TWH9|A0A072TWH9_MEDTR | 3.00E-123 | Late embryogenesis abundant hydroxyproline-rich glycoprotein {ECO:0000313|EMBL:KEH21238.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00036 | 352192 | 354170 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000036s00004658.1 | PF03168.8 | LEA_2 | 86 | 191 | 2.40E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.621 |
| SRR1783600 | control | 22.887 |
| SRR1783602 | moderate drought stress | 31.959 |
| SRR1811619 | moderate drought stress | 31.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 21.045 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.745 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.587 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.697 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.986 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.787 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.277 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.592 |
| SRR2868004 | Drought Stress (root) | 12.059 |
| SRR2967015 | Control (root) | 14.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.022 |
| SRR9715740 | Leaf | 4.045 |
| SRR9715741 | Leaf | 3.455 |
| SRR9715739 | Root | 31.284 |
| SRR9715742 | Root | 13.858 |
| SRR9715743 | Root | 15.951 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.758 |
| SRR8749028 | MeJA induced 9h | 2.484 |
| SRR8749029 | MeJA induced 9h | 5.159 |
| SRR8749030 | Uninduced | 0.927 |
| SRR8749031 | Uninduced | 0.152 |
| SRR8749032 | Uninduced | 0.722 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.029 |
| SRR8400027 | Control - Root | 18.872 |