Gene detail information of Glyur000036s00004653 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G64430.2 | 7.00E-175 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | KEH21233.1 | 0 | PPR superfamily protein [Medicago truncatula] |
| trEMBL | tr|A0A072TWH6|A0A072TWH6_MEDTR | 0 | PPR superfamily protein {ECO:0000313|EMBL:KEH21233.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00036 | 324220 | 329884 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.525 |
| SRR1783600 | control | 2.463 |
| SRR1783602 | moderate drought stress | 3.016 |
| SRR1811619 | moderate drought stress | 2.873 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.967 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.155 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.342 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.279 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.537 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.431 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 55.031 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 54.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.748 |
| SRR2868004 | Drought Stress (root) | 9.631 |
| SRR2967015 | Control (root) | 8.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 42.491 |
| SRR9715740 | Leaf | 51.208 |
| SRR9715741 | Leaf | 42.357 |
| SRR9715739 | Root | 0.402 |
| SRR9715742 | Root | 1.965 |
| SRR9715743 | Root | 1.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.296 |
| SRR8749028 | MeJA induced 9h | 5.912 |
| SRR8749029 | MeJA induced 9h | 3.630 |
| SRR8749030 | Uninduced | 1.239 |
| SRR8749031 | Uninduced | 0.706 |
| SRR8749032 | Uninduced | 0.937 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.537 |
| SRR8400027 | Control - Root | 5.641 |