Gene detail

Gene detail information of Glyur000036s00004643

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G64390.1	0	glycosyl hydrolase 9C2
NR	XP_003530388.1	0	PREDICTED: endoglucanase 6-like [Glycine max]
COG	YP_004908734.1	3.00E-108	putative endoglucanase precursor [Kitasatospora setae KM-6054]
Swissprot	tr\|Q42059\|GUN6_ARATH	0	Endoglucanase 6 (Precursor)
trEMBL	tr\|I1KPJ3\|I1KPJ3_SOYBN	0	Endoglucanase {ECO:0000256\|RuleBase:RU361166}

Sequence

Transcript Sequence

>Glyur000036s00004643.1
ATGGAAAAGCTCGCGAAACTCATTTGCATGTTTCCTCTGCTTCTGCTTCTGCTCCCATCATTTGCATTCGCTGGCCATGACTACGGCCAAGCTCTGAGCAAGAGCATTCTCTTCTTTGAAGCTCAGAGATCTGGTTATCTTCCACATAACCAGAGAGTGACATGGAGATCTCATTCTGGTCTTCAAGACGGTAAAGCAAGCGGGGTAGATCTAGTGGGAGGGTACTATGATGCAGGGGACAATGTGAAGTTCGGGTTACCCATGGCATTCACCGTTACGATGATGTCATGGAGCATCATAGAGTACGGTAAGCAATTGGCTGCTAGCGGTGAGCTTGGTCATGCCATGGAAGCCGTGAAATGGGGTACTGATTACTTCATCAAAGCCCATCCTCAGCCCAATGTTCTCTACGGGGAGGTAGGAGACGGGAACACTGACCACTACTGTTGGCAAAGGCCGGAGGACATGACTACTGACCGTCACGCTTACAGGATTGACCCGANCAATCCCGGGTCGGATCTCGCCGGAGAAACTGCCGCCGCCATGGCCGCAGCCTCCATTGTCTTCCGCCACTCTAACCCTGCCTATTCCAGCGAACTCCTCCGCCATGCCTATCAGTTATTTGATTTTGCGGATAAATACAGAGGCAAATATGACAGCAGCATTACGGTTGCACAGAAGTACTACAGATCCATCAGTGGCTACAACGACGAGTTGCTCTGGGCTGCGGCGTGGTTGTATCAAGCATCTAACAATCAGTATTACTTGGATTACCTTGGTAGAAATGGTGACTCCATGGGTGGAACTGGTTGGTCCATGACTGAATTTGGTTGGGACGTCAAGTATGCTGGGGTTCAGACATTAGTTGCCAAGTTCCTAATGCAAGGCAAAGCTGGCCATCATGCACCAGTGTTTGAGAAGTTTCAGCAGAAGGCTGAGTATTTCATGTGTTCATGCCTTGGAAAGGGTACTCGCAATGTTCAGAAGACCCCTGGTGGCCTCATCTTCCGCCAGAGATGGAACAACTTGCAGTTTGTGACAAGTGCCTCCTTTTTGGCCACTGTCTATTCTGACTACCTTGCTTCTTCTGGTAGAAACTTGAGATGCGCTTCCGGCAATGTCCCTCCTGCTGCGCTTCTTTCCCTTGCAAAGTCTCAGGTGGACTACATTCTTGGGGACAACCCAAGAGCCACAAGTTACATGGTGGGCTATGGAAGCAATTTCCCTCAGAGAGTTCACCACAGAGGTTCATCCATTGTTTCCATCAAGCATAACCCTTCATTTGTCAGCTGCCGTGGAGGTTATGCTACTTGGTTTAGCAGCAAAAAGAGTGACCCCAATCTACTCACCGGTGCAATTGTTGGTGGACCTGATGCATATGATGACTTTGCTGATGAAAGAGATAACTATGAGCAAACTGAACCAGCAACCTACAACAATGCTCCTCTTATAGGTATTCTAGCACGACTCAGTGGAGGTCATGGTGGCTATAACCAGCTCCTTCCAGTTGTTCCAGCTCCTAAGCCTGTTTTTANCAAGCCCCAACCATCCCCCAAGTCCAAGATAACTCCTCCATCCCCAGCTTCATGGTCAGGCCCAATTTCCATTGAACAGAAAATGACCACCTCATGGGTTGCCAATGGGAAAACTTATTATAGATACTCAACAGTGGTGACTAACAAATCTACCAAGAATCTCAAGTCTCTCAACCTTTCAATATCCAAGCTTTTTGGTCCAGTCTGGGGACTCACAAAGTCTGGTGATTNATACACATTCCCATCATGGCTCAGCTCATTATCAGCTGGTAAAAGCCTTGAATTTGTCTACATCCATTCTGCCTCTCCAGCAGATGTCTCGGTTGCGAACTACTTATTGGCCTGAGAATGAACAATAAACAATTTGGTTTAAAAGTCAGATGGAAATGGTTTACTGCTTTGGTGTGCAAGACTATGTAGCCCATACGAAATGTGTAGTGGGGAGAGGTTCTTTTCATTTTCCTTTTCCTTTTCTATTTTGGTGTCAAATCATTTTCTCTTGTGTATTTTGCATTTCATTAGGTTAGATCAAAATAGATAGATTATATAAGATGGAAGGACNGGAGCAGAAAGGAGTGAAGAGACAATAAGAGAGTGCTCATCCTCTTTCTTCTCCGCTTTACAACTTATATACAGTGAGTGATACAAGACAGACAGCGAGAGAGCGATGGTTGAGAAGTTCAGAAAAGAAAAATGAACTTCTCAACATGTCAGAGAAGAGTCATCACTTGTATTTTTTAAAAGCTTTGGATGTCTTTTCTGTGTTGGTGNTGTTGTAAACTTTGCAGCATTTTGTATTTCTACTATAGATAACAGCTTGTGCAATAGTATTATGTCTTTGTGCTGTGTGATGCTAATTTGCGAATTTATGTTGTGGTATATGTGAATTTGCGAATGTAGCTATTTGACGAATTCCAACTTGAGGN

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00036	258295	263859	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH9,CBM49

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function

GO:0003824 catalytic activity

GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

GO:0030246 carbohydrate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000036s00004643.1	PF00759.14	Glyco_hydro_9	27	488	5.30E-171
Glyur000036s00004643.1	PF09478.5	CBM49	534	611	1.20E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	23.168
SRR1783600	control	23.313
SRR1783602	moderate drought stress	6.148
SRR1811619	moderate drought stress	6.011

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	13.747
DRR006520	Root Summer glycyrrhizin high producing strain	13.362
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	25.891
DRR006524	Root Summer glycyrrhizin low producing strain	26.292
DRR006525	Leaf Summer glycyrrhizin high producing strain	39.075
DRR006526	Leaf Summer glycyrrhizin high producing strain	39.171

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	131.859
SRR2868004	Drought Stress (root)	46.514
SRR2967015	Control (root)	62.745

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.827
SRR9715740	Leaf	2.732
SRR9715741	Leaf	5.254
SRR9715739	Root	5.152
SRR9715742	Root	4.752
SRR9715743	Root	4.021

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	16.761
SRR8749028	MeJA induced 9h	2.779
SRR8749029	MeJA induced 9h	1.889
SRR8749030	Uninduced	0.123
SRR8749031	Uninduced	0.031
SRR8749032	Uninduced	0.228

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	113.261
SRR8400027	Control - Root	78.288