Gene detail information of Glyur000036s00004640 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G41850.1 | 1.00E-85 | alpha/beta-Hydrolases superfamily protein |
| NR | KEH21210.1 | 1.24E-149 | alpha/beta hydrolase family protein [Medicago truncatula] |
| COG | YP_002490950.1 | 1.00E-57 | hypothetical protein A2cp1_0527 [Anaeromyxobacter dehalogenans 2CP-1] |
| trEMBL | tr|A0A072U5T9|A0A072U5T9_MEDTR | 5.00E-150 | Alpha/beta hydrolase family protein {ECO:0000313|EMBL:KEH21210.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00036 | 230978 | 234372 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000036s00004640.1 | PF12695.2 | Abhydrolase_5 | 44 | 208 | 3.20E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 48.717 |
| SRR1783600 | control | 48.926 |
| SRR1783602 | moderate drought stress | 39.353 |
| SRR1811619 | moderate drought stress | 38.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 97.867 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 103.138 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.297 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.072 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 65.970 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 64.066 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 21.031 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 42.162 |
| SRR2868004 | Drought Stress (root) | 35.593 |
| SRR2967015 | Control (root) | 37.831 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.200 |
| SRR9715740 | Leaf | 8.166 |
| SRR9715741 | Leaf | 6.818 |
| SRR9715739 | Root | 9.507 |
| SRR9715742 | Root | 29.143 |
| SRR9715743 | Root | 24.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 51.350 |
| SRR8749028 | MeJA induced 9h | 17.017 |
| SRR8749029 | MeJA induced 9h | 28.752 |
| SRR8749030 | Uninduced | 2.055 |
| SRR8749031 | Uninduced | 1.229 |
| SRR8749032 | Uninduced | 2.082 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 45.982 |
| SRR8400027 | Control - Root | 38.523 |