Gene detail

Gene detail information of Glyur000036s00004638

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G11070.1	5.00E-55	WRKY family transcription factor
NR	ABX10954.1	0	WRKY family transcription factor [Cicer arietinum]
Swissprot	tr\|Q8H0Y8\|WRK41_ARATH	6.00E-65	Probable WRKY transcription factor 41
trEMBL	tr\|B4XKD2\|B4XKD2_CICAR	0	WRKY family transcription factor {ECO:0000313\|EMBL:ABX10954.1}

Sequence

Transcript Sequence

>Glyur000036s00004638.1
AGTCATGTAAGCAGTCTTGTTTAACTGTATAAGTGAAGTAATGATACTAAAAGGGACCAAAAAGCGACCACGCGGAATGATATTTGAAAATTCTCATCTCAAGCCCCCCTCCTCTCTTCAATATTGACATTCTTAATCGTCTATATAATTATGCGTTGGAAGAACATGGGCCTATCATTANCCAATAATAACTTATCGAGGTGAAGTGGACTCGGTCAGGCATTCTATTTGTCACTGTTCACTGACTCGATCCTAGTCTTAGCTGAAAAACTCGCTTTCTCAGTCAAACTTGGACTTTGAACCCTCCAATACTCCTCTCCTTCGCTCCCTTATTTGCCACTCAAAACCCCCAAAGTGTGTGCGTACCCTTTAAATACAAAGGCCTCTCATTCCTTCACCCAGCAAAAAAATTCAAAAAACTTAGCTCTCACTAAAATTTGCTCCTTCAGCCTCACTCCCTCTCTCTTCTGTCTTCTCCAACAGCAAACCATTCAACCGAAAAAGAAAATCCAATTTGAAATTTCAAATCTTGTTCTGGGTACGTCCATGCTCATAGCTTACTATACTTCATCAGGGTCTCCTAAAGTAGAAGTGATGCTCTTGGGCATGAAATAGATATCAAGCATCAACATCCTTAATAATTACTAAGGTGATAGACAATACAAAATGGAGAATGAATGGAGCTGGGAGCACAGCACACTCATCAATGAGCTAATTCAGGGAATGGAGGTGGCAAGAAGATTGAAGGAAGATTTGAGGACACCATATCCTGCTGACACAAGGGATTTGCAGGTGCAGATGATACTATCTTCTTATGAAAAGGCTCTACAAATTCTAAAATGGAATGAATCAACTTCCAAGTTGCAGACCATGAACCGAGCGGTAACCTTGTTACCAGAGTCCCCTCCACTGAGCGACGACGTTGATGGGGGCATCCAAGATCACCAGGAGATTAAACACGATTCAAAGAAAAGAAAGATTGTGCCTAAATGGACGGATCAGGTAAGAGTGGGCTTTGAGAGTGGCCTTGAAGGATCACATGACGATGGCTACAACTGGAGAAAATATGGTCAGAAAGACATCCTCGGTGCGAAATATCCTAGAAGTTACTATAGATGCACCTTCCGGAACACACAGAACTGCTGGGCCACGAAGCAAGTACAGAGATCAGATGAAGATCCCACAATATTTGACATAACNTACAAAGGAAAGCATACCTGTTCTCAGGGAAGCAATGCTGTTCTGCCACTTAAGTCACCGGGCAAACAAGAGAAACCGGACCGTCATAATAATGATATTCGCCATGCACAACCGTCACAAGAAAGCTTTACAAAGTTCAGAAACACCTTGACTGTCAGAGCGGATAATCTGGGAAATGAAGAAATGGCATGTCCTTTCACTTTCCCTTCCACTTCATTTGGATGCACGACGACACAAGAAAACAACAGCTTGATTCCTTCAGCCTTCGAGAATGATTCCTTCTTGAGCAGCCTTTTCCAAACACAATATGTATCTCCAACAACGCCAGAATCAAACTATTTCTCATCTCCAACTTTCCACATGAATGGGTTTGATGGGATCTATAACAAGCCTCGTTCGGAATCTGATATTACTGAGATAATTTCCACCAACACATCAGCCACCAATTCTCCAATTCCNGAATTCAATTTCTCACTTGATCCAGTGGAAATTGATCCGAATTTCCCTTTCAATACTCCAGGCTTTTTCTCCTAAGTGTACTTAAGAATAAATGGAATATTAGGAGTATAAACAACATCATCAACAACNGAAGCCTTTTTCAGTGAGTAAGGTAGGCTACATGGATCAAATAACATGGAAAATCATGTTTGAATATTATGTGTATGAAGTTATACTAAAATAGGACAACTTCAGAAAGTAGCAGAATTGTAGAACAACGAATCAGCAATGATAGCTTAGTGCTATTTATAAACGTCCTTGTAGTTAATATTAGAATTACAATTTTAGCACTGTTTAGCAGTATTTACTTTCAAATAAGAAGGTGCCCCAAATTTGCATTGGTAAAGCCTACATGACTTACATTTTTAGTATAAGAGGATGCCAGTCATAATAATGAGAGCAATTAACCAAAGAGAATTAAGTTACATAATTTAACTACATCATCCAAAAAAGGATCAATATTAAAAGATAGCTTTTATATCATTATTGAAGGGCAAGTCGTTATTCATGTAACATGTAATGGAACAGACCAAAAATTGCGATCAAAATTGGATATACTAACCAAAGCTTTGTAAGATTTCATTCCAATTAATGATAAATTACACAAAATCCAACATTTATATCCATCTTATTTACAAAATATCCCACAGGCTGCAACGATTAGTTAGAGATTTTTAAGGCAATGATTATAAATCCCAGCCAAAATTTGGAGCAACATCTGAGCCGAACCGATAGAGCAAATGATAATACCACACTGCTAAATGGTAATAGTAAGAATGACTCCAAATATCAAACCTTCATCCCACGTTTCTTCTCCTCCTTCGAACCCGGGTTTGGAGTGGGTGCGTTTTTCTCTGAATTTCCAGATTTTCTGAGTCCCTCTCTCAGACCCAGCACAATGAACAGATTGGTGAGAGTGAGAAGGGACTCAGCCCCGCCATGTAACCAGTCCACGTTGGACAAAGAAGTTCCATAATGCAACTTTGCTGTCAAACCATGCAACAAAAACATAAGTAAGAATATACCCATGGCCATTTGGTGGTGGCTTATGCCTTATGACCTATCTAATTGAACTTCAATTCATTTTCAGCAAGTGAACTTCACTCACCATAAATTCCAGCCGGTACT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00036	221553	224611	-

Gene family

Gene family	subfamily
Transcription Factors Family	WRKY

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000036s00004638.1	PF03106.10	WRKY	126	186	2.30E-27

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.540
SRR1783600	control	3.334
SRR1783602	moderate drought stress	2.239
SRR1811619	moderate drought stress	2.251

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	113.002
DRR006520	Root Summer glycyrrhizin high producing strain	103.812
DRR006521	Root Winter glycyrrhizin high producing strain	1.642
DRR006522	Root Winter glycyrrhizin high producing strain	1.421
DRR006523	Root Summer glycyrrhizin low producing strain	200.935
DRR006524	Root Summer glycyrrhizin low producing strain	198.831
DRR006525	Leaf Summer glycyrrhizin high producing strain	59.974
DRR006526	Leaf Summer glycyrrhizin high producing strain	64.306

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.935
SRR2868004	Drought Stress (root)	27.423
SRR2967015	Control (root)	33.679

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	225.615
SRR9715740	Leaf	163.640
SRR9715741	Leaf	188.960
SRR9715739	Root	14.009
SRR9715742	Root	75.807
SRR9715743	Root	62.899

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	33.149
SRR8749028	MeJA induced 9h	13.113
SRR8749029	MeJA induced 9h	15.130
SRR8749030	Uninduced	125.715
SRR8749031	Uninduced	22.385
SRR8749032	Uninduced	33.750

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.655
SRR8400027	Control - Root	35.948