Gene detail information of Glyur000036s00004631 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G41800.1 | 2.00E-43 | Transmembrane amino acid transporter family protein |
| NR | KEH21201.1 | 1.96E-55 | transmembrane amino acid transporter family protein [Medicago truncatula] |
| Swissprot | tr|Q8L4X4|GAT2_ARATH | 3.00E-51 | Probable GABA transporter 2 |
| trEMBL | tr|A0A072TVJ0|A0A072TVJ0_MEDTR | 7.00E-56 | Transmembrane amino acid transporter family protein {ECO:0000313|EMBL:KEH21201.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00036 | 195167 | 195686 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000036s00004631.1 | PF01490.13 | Aa_trans | 46 | 122 | 3.10E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.093 |
| SRR1783600 | control | 0.773 |
| SRR1783602 | moderate drought stress | 3.952 |
| SRR1811619 | moderate drought stress | 4.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.110 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.717 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.439 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.585 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.156 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.383 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.986 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 4.223 |
| SRR2868004 | Drought Stress (root) | 3.086 |
| SRR2967015 | Control (root) | 2.763 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.020 |
| SRR9715740 | Leaf | 2.632 |
| SRR9715741 | Leaf | 6.096 |
| SRR9715739 | Root | 3.812 |
| SRR9715742 | Root | 14.017 |
| SRR9715743 | Root | 9.820 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.063 |
| SRR8749028 | MeJA induced 9h | 3.930 |
| SRR8749029 | MeJA induced 9h | 1.778 |
| SRR8749030 | Uninduced | 1.464 |
| SRR8749031 | Uninduced | 1.358 |
| SRR8749032 | Uninduced | 1.579 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.405 |
| SRR8400027 | Control - Root | 12.953 |