Gene detail information of Glyur000036s00004630 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11080.1 | 1.00E-94 | HMG (high mobility group) box protein |
| NR | XP_004503638.1 | 0 | PREDICTED: high mobility group B protein 6-like [Cicer arietinum] |
| Swissprot | tr|Q9T012|HMG13_ARATH | 3.00E-170 | High mobility group B protein 13 |
| trEMBL | tr|V7CPN1|V7CPN1_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW32142.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00036 | 190997 | 193424 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HMG |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000036s00004630.1 | PF00505.14 | HMG_box | 168 | 229 | 1.60E-16 |
| Glyur000036s00004630.1 | PF00505.14 | HMG_box | 283 | 349 | 1.60E-16 |
| Glyur000036s00004630.1 | PF00505.14 | HMG_box | 412 | 480 | 5.30E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.764 |
| SRR1783600 | control | 19.083 |
| SRR1783602 | moderate drought stress | 10.504 |
| SRR1811619 | moderate drought stress | 10.516 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.716 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 29.611 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.316 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.339 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.420 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.624 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.945 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.982 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 79.789 |
| SRR2868004 | Drought Stress (root) | 34.942 |
| SRR2967015 | Control (root) | 46.145 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.965 |
| SRR9715740 | Leaf | 0.723 |
| SRR9715741 | Leaf | 5.054 |
| SRR9715739 | Root | 1.099 |
| SRR9715742 | Root | 3.328 |
| SRR9715743 | Root | 4.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 127.838 |
| SRR8749028 | MeJA induced 9h | 75.347 |
| SRR8749029 | MeJA induced 9h | 75.115 |
| SRR8749030 | Uninduced | 0.468 |
| SRR8749031 | Uninduced | 0.367 |
| SRR8749032 | Uninduced | 0.981 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 46.578 |
| SRR8400027 | Control - Root | 38.781 |