Gene detail information of Glyur000036s00004629 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G11090.1 | 3.00E-138 | TRICHOME BIREFRINGENCE-LIKE 23 |
| NR | XP_004503639.1 | 0 | PREDICTED: uncharacterized protein LOC101504184 [Cicer arietinum] |
| Swissprot | tr|O82509|TBL23_ARATH | 4.00E-172 | Protein trichome birefringence-like 23 |
| trEMBL | tr|I1K6B0|I1K6B0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G37030.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00036 | 186032 | 189968 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000036s00004629.1 | PF14416.1 | PMR5N | 99 | 152 | 3.60E-20 |
| Glyur000036s00004629.1 | PF13839.1 | PC-Esterase | 153 | 447 | 5.50E-66 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.114 |
| SRR1783600 | control | 9.079 |
| SRR1783602 | moderate drought stress | 6.217 |
| SRR1811619 | moderate drought stress | 6.274 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.526 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.214 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.590 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.514 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.520 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.303 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.624 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.649 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.468 |
| SRR2868004 | Drought Stress (root) | 11.206 |
| SRR2967015 | Control (root) | 10.370 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.076 |
| SRR9715740 | Leaf | 8.859 |
| SRR9715741 | Leaf | 5.515 |
| SRR9715739 | Root | 4.218 |
| SRR9715742 | Root | 6.349 |
| SRR9715743 | Root | 6.439 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 27.405 |
| SRR8749028 | MeJA induced 9h | 23.514 |
| SRR8749029 | MeJA induced 9h | 16.233 |
| SRR8749030 | Uninduced | 8.947 |
| SRR8749031 | Uninduced | 4.388 |
| SRR8749032 | Uninduced | 3.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.692 |
| SRR8400027 | Control - Root | 13.074 |