Gene detail

Gene detail information of Glyur000036s00004626

Functional Annotation

Database	Orthologs	E value	Annotation
NR	XP_004503642.1	6.51E-29	PREDICTED: arabinogalactan peptide 16-like [Cicer arietinum]
Swissprot	tr\|Q9M373\|AGP20_ARATH	3.00E-17	Arabinogalactan peptide 20 (Precursor)
trEMBL	tr\|I1KPI2\|I1KPI2_SOYBN	1.00E-27	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G02480.1}

Sequence

Transcript Sequence

>Glyur000036s00004626.1
TGGGATTCGGGAAGAAAAAGGTTGGCGGGGGAGGCATGAGAGGCAGGATGCATATGGCGCCAAAGGCGTGGCAGAGTGTGATTNAGAAATGGGAGAATCCAATTTCATTTATTTGAAAACCAATCAATGGGAAATCACCTCACATGGGTTACCGAAACATACGGCTGGATAGTGGACCCCACACCACCGCAAGAAAATGGCATTTTTCGTTACCGGCTTCACCGGTTGCCTCTCTTCTCTTTTGTCTCTCCCACGCACACCCCTAACTGACAACTGTAACCACCTTTTAAACCTCTCTCCGTCGCTCCTCCCTCACCCTCACCACTGCGCATTCCTTCCTTCCTTTCCTTCCTCTCATACACTCTCTGCGCGCCTCTTCCGCACTCGAGAGAGAGAGAGAGAGAGAGAGACGCTGCAGAGGGAAATACTACCTACCAAACGTTTTTACGTTCTAACATAATGGCGGGTATCAAACATTCCTTCGGAATCGGAGTCGTGGCCATGCTTGCTGCTCTCATTTTTGCTCTGTCCATGCCCGCTGCTGTTCACGCTCAATCTCCATCCCCTGCACCTGCCCCTACCAGCGACGGGTCGTCTGTTGATCAAGGAATAGCTTATCTGTTGATGTTGCTGGCTCTGGTGCTGACGTACCTCATCCACTCGCCCGACATTTCCTCCACCTTCTGAATAGCAGCATTGTCGGTGCCTGAGAGAGGGTGTTATGTTTGTTANGACGTGTGATTAACATGTTCGTGCACTAGGGAGAAGAAGGGGGAAAATGTAATAATGATATGAAATTTGATAGATTGAGAGGTGTTATGTTTGTTTTCCTAGAGAAGAAAGTGATCTGTGCCATTTAGTGGCTTGTGGTTGGTACCAATGTCATTTTCCTTCAAGTGATGGACCTAGTTGTTCTCGTAATCTCGTCTGTGATTTTTCTCTTAGTGATATAATGATGATCATGTTTTTCGCATTATGGGTGCATGACCAGATGAATTAACTATCAGGAATGAACTATTCCNAGTAAAACCAGAAATCTATATATTAGAATGCTAAAAGTTCTATTCATGGTTAACTTAGAAGCACATATTGTAACCGGTCACAAATTTCATTCCATTTTGCAAAAAGGGTTCTGAATGTTAAAGCAGAACAAGGTAAACTGGAAATCTTTTGCTTTAATCCTAGGCCNCCGAGTGATTAAGGTGGGTGAGAAGGTCAAACATCTGGCATAACATCTAACATGCTGAAATATGCATGCCATTGGTTTCACCTTCCATTCGACTTTACACTCGAAACCAAAAAATTATCAAAATCATAATTATTTGTGGATACATGCAAGTGAACAGCTTCTGCACATCAAAACAGTGATAAAATGGTAAGAATGGAGAAGAGTAATGGGAGGGGATGATACATGAAGCTATGAACTAAAAAGGTCGTGGAAAGCAGTGATACCAATACATAATTAAGCTTTCTTGCTGCTCGGTTTAGTTTCCTGTTGCTCCTGTTNAGCTAGAGAAAATGTCTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00036	152119	153925	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000036s00004626.1	PF06376.7	DUF1070	35	67	1.00E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	644.529
SRR1783600	control	642.871
SRR1783602	moderate drought stress	171.445
SRR1811619	moderate drought stress	179.669

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	128.729
DRR006520	Root Summer glycyrrhizin high producing strain	127.749
DRR006521	Root Winter glycyrrhizin high producing strain	72.977
DRR006522	Root Winter glycyrrhizin high producing strain	70.450
DRR006523	Root Summer glycyrrhizin low producing strain	98.455
DRR006524	Root Summer glycyrrhizin low producing strain	98.015
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.726
DRR006526	Leaf Summer glycyrrhizin high producing strain	20.208

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	114.169
SRR2868004	Drought Stress (root)	54.612
SRR2967015	Control (root)	59.869

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.264
SRR9715740	Leaf	9.971
SRR9715741	Leaf	13.377
SRR9715739	Root	233.928
SRR9715742	Root	75.696
SRR9715743	Root	103.446

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	94.277
SRR8749028	MeJA induced 9h	41.482
SRR8749029	MeJA induced 9h	100.061
SRR8749030	Uninduced	15.397
SRR8749031	Uninduced	20.573
SRR8749032	Uninduced	52.931

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	524.999
SRR8400027	Control - Root	413.824