Gene detail information of Glyur000036s00004621 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01780.2 | 1.00E-50 | 2-oxoglutarate-dependent dioxygenase family protein |
| NR | XP_004514555.1 | 2.98E-70 | PREDICTED: uncharacterized protein LOC101492962 [Cicer arietinum] |
| COG | YP_003340056.1 | 6.00E-22 | alkylated DNA repair protein [Streptosporangium roseum DSM 43021] |
| Swissprot | tr|Q9SA98|ALKBH_ARATH | 2.00E-06 | Alpha-ketoglutarate-dependent dioxygenase alkB |
| trEMBL | tr|K7K3K1|K7K3K1_SOYBN | 4.00E-70 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G32116.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00036 | 128435 | 129763 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000036s00004621.1 | PF13532.1 | 2OG-FeII_Oxy_2 | 13 | 133 | 7.70E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.235 |
| SRR1783600 | control | 0.270 |
| SRR1783602 | moderate drought stress | 0.594 |
| SRR1811619 | moderate drought stress | 1.247 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 30.138 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.369 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.632 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 22.834 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 10.834 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.429 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 61.700 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 61.927 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.668 |
| SRR2868004 | Drought Stress (root) | 26.088 |
| SRR2967015 | Control (root) | 40.678 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 63.242 |
| SRR9715740 | Leaf | 0.116 |
| SRR9715741 | Leaf | 23.145 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.785 |
| SRR8749028 | MeJA induced 9h | 7.347 |
| SRR8749029 | MeJA induced 9h | 23.265 |
| SRR8749030 | Uninduced | 5.096 |
| SRR8749031 | Uninduced | 16.997 |
| SRR8749032 | Uninduced | 18.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.060 |
| SRR8400027 | Control - Root | 0.030 |