Gene detail

Gene detail information of Glyur000036s00004600

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G63540.1	1.00E-128	Domain of unknown function (DUF1767)
NR	XP_007160004.1	0	hypothetical protein PHAVU_002G284900g [Phaseolus vulgaris]
Swissprot	tr\|Q5XUX6\|RMI1_ARATH	4.00E-163	RecQ-mediated genome instability protein 1
trEMBL	tr\|V7CRL1\|V7CRL1_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW31998.1}

Sequence

Transcript Sequence

>Glyur000036s00004600.1
AAAAAATGCACATACGCCGTCTCAGGCTCGACGACGACGACGAAGACGGCGAACAAGAAGACGCAGTTGAGCCCCAACCCCAGCCTCAGCCTCAGCCTCAAACAGCCACACATCAAGCTCCAAACTCTACCAGTTTTCACTCAGAGCCCGTTGTAATCTCCGACGACGACTTCGTCGACGTCCCCGACGACCTCTCCCCGCCGTCTCCTCTGGCTCCCGGCGGCTGTCCCGTGAGCGATTATCTCCGCCGCCTCGGGTTGGGGCTGAAGAGGGACTGGCTTGCCGCTTGTCTTCGCGAGCTCCAGGGCTCCGTTAGGGGATTCGAAGGGTTCGATGTCGCCGCAAAGTCCAAGCTCTGTTTCCAGCACTCTCTCNTTGCCGACCTCAACTTCTGTGGTAGCGGCGTGCTTCCCCCCAACGTCGATTCCATGCACCTCGCTCTTCTCCCTGGTCCCTACGTTTTGCAGGTTGATGAAATAATCAATATCAGTTGTCCTCTACGAAGCAGATACCAACAAGCCCCTCCTGGACTTAAAAGGTGTCTCAAGTTGTCAATGACCGATGGCATTCAGAGAGTCTTTGGAATGGAGTACAGNCCTATAAAAGCTCTTGAAGTTTGTGCACCTTCTGGTTTAAAGGTTGCTATCTCTAATGTACATGTGCGTCGTGGACTTTTGATGCTGGTCCCTGAAACCATTGAAATTTTGGGGGGATTAGTTGAGCAGCTGGATGCAGCACGAAAGCGGCTGGTTGATGAATTAAATAAGCCACCTAGGGGAAGAAGAACCCGAAATGGAGTGCTTCCTCCTTTAGCAACTAGAGCAACTCTTGCTGCATGGCCTTCAAGTGGAGTTGATGATCTTGGGAACAGTGGCTCCACGTTGCACAGTACTGATTCTTTCCAGGCAAACAACCAAGGTGTTGGTCAGAGCATTCCTGGCACTGTTAACAGCTTACCAACTGGAGATACCGTGCTCATGGATGCACAAAATGCTACTTCCAATTCAATACCCGGCATGGTTTCAAACGTTGAGGCAATGCATATTGATATGCAGCGGGGTACTAATCCTGTATCCCATCATAGTTCTATTGCTAACCAATTTTCTTCAAACGCTGAGGAGATGCATATAGATACTGCTAATATCACCAGGGAAAATTCTGTTGGCAACCAATCTTCTCACATGCACTCAAATGTTGCAGTGGCACATAAAGATACTGTTCATGTAACAAGAGAAAGTACTGTGCCTACTCAGTGCTCTCCTGTTTCTGAAAATGTTGAGACAAACAGGGACAGAATCCCTGTAACCACAGATAATGCTCCTCTGAGAGGATCCTCCTCCACTGTTTCAAACAGTGAAGATACCCCAATGGTTGATGTCAGTGACCATCCACTCATACTGTCTGGAGACCGAGAGGTTCCTTTCACATACTTAGCTAGTTTGTCAGCCAAGTGGGCTGCAATGAAGGAGAAAGCTCCTCTGGTTCGTGGTAAAATTAAGTGCTTTTTGACCGGTGTAAAAGGATTCCAGTATAAGAAAAGGACAACATACGAGCTTCAGGCATATGTAGATGACGGTAGCCTTATTTCTGAAATACTCATTGATCATGATGTTGTACAGAAAGGAATTGGTTATTCTCCCGAGGAGGTCACTGCGGCTCTTTCTTCTTCTGACACGAAAATAGTCCACAACATGAAGGAGACGATGCGTAAATTCCAAGCTTTTCTAGCAAACTTTGAGGGAGTAATACTTGTGGAATTAAATAGAAAATGTTCCCTTCCACTTACCCTAGACATGAGTCAAGGCTGTCTTCAATCTGATGCGTGGTTACTTCTGAGAAGGCTGAAGTCTCTTCAACCTGCGCAAGTTCAAGAGCATTTTCCTTCGGACCCAATTGTTTTATCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00036	6444	10100	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000036s00004600.1	PF08585.7	DUF1767	79	170	1.70E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.981
SRR1783600	control	0.978
SRR1783602	moderate drought stress	0.779
SRR1811619	moderate drought stress	0.629

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.277
DRR006520	Root Summer glycyrrhizin high producing strain	1.233
DRR006521	Root Winter glycyrrhizin high producing strain	0.660
DRR006522	Root Winter glycyrrhizin high producing strain	0.580
DRR006523	Root Summer glycyrrhizin low producing strain	1.444
DRR006524	Root Summer glycyrrhizin low producing strain	1.508
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.519
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.594

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.867
SRR2868004	Drought Stress (root)	1.545
SRR2967015	Control (root)	2.098

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.666
SRR9715740	Leaf	0.731
SRR9715741	Leaf	0.286
SRR9715739	Root	0.371
SRR9715742	Root	0.634
SRR9715743	Root	0.615

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.899
SRR8749028	MeJA induced 9h	4.523
SRR8749029	MeJA induced 9h	1.453
SRR8749030	Uninduced	0.404
SRR8749031	Uninduced	0.623
SRR8749032	Uninduced	0.503

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.276
SRR8400027	Control - Root	2.101