Gene detail information of Glyur000035s00005026 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G35760.1 | 7.00E-64 | Uncharacterised protein family (UPF0497) |
| NR | XP_003547283.1 | 2.63E-122 | PREDICTED: CASP-like protein RCOM_0864260-like [Glycine max] |
| Swissprot | tr|A7R385|CSPLC_VITVI | 9.00E-113 | CASP-like protein 2B1 |
| trEMBL | tr|I1MFQ2|I1MFQ2_SOYBN | 1.00E-122 | CASP-like protein {ECO:0000256|RuleBase:RU361233} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00035 | 493387 | 495349 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000035s00005026.1 | PF04535.7 | DUF588 | 26 | 173 | 1.90E-44 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.054 |
| SRR1783600 | control | 4.007 |
| SRR1783602 | moderate drought stress | 2.428 |
| SRR1811619 | moderate drought stress | 2.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.969 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.605 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.403 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.507 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.578 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.449 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.785 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.833 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 21.211 |
| SRR2868004 | Drought Stress (root) | 30.680 |
| SRR2967015 | Control (root) | 20.255 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 10.102 |
| SRR9715740 | Leaf | 5.672 |
| SRR9715741 | Leaf | 9.138 |
| SRR9715739 | Root | 2.889 |
| SRR9715742 | Root | 16.573 |
| SRR9715743 | Root | 15.102 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.891 |
| SRR8749028 | MeJA induced 9h | 1.332 |
| SRR8749029 | MeJA induced 9h | 3.514 |
| SRR8749030 | Uninduced | 0.187 |
| SRR8749031 | Uninduced | 0.275 |
| SRR8749032 | Uninduced | 0.065 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.681 |
| SRR8400027 | Control - Root | 20.166 |