Gene detail information of Glyur000035s00005021 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17230.1 | 6.00E-136 | SCARECROW-like 13 |
| NR | XP_003546192.1 | 0 | PREDICTED: scarecrow-like protein 13-like [Glycine max] |
| Swissprot | tr|Q9M0M5|SCL13_ARATH | 0 | Scarecrow-like protein 13 |
| trEMBL | tr|I1MFQ0|I1MFQ0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G12320.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00035 | 466489 | 468108 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000035s00005021.1 | PF03514.9 | GRAS | 242 | 471 | 9.50E-73 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.885 |
| SRR1783600 | control | 9.621 |
| SRR1783602 | moderate drought stress | 14.359 |
| SRR1811619 | moderate drought stress | 14.496 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 46.041 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 46.519 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 30.048 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 29.520 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 54.057 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 54.047 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 26.302 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.117 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 22.817 |
| SRR2868004 | Drought Stress (root) | 21.181 |
| SRR2967015 | Control (root) | 49.473 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 130.968 |
| SRR9715740 | Leaf | 220.363 |
| SRR9715741 | Leaf | 164.331 |
| SRR9715739 | Root | 87.457 |
| SRR9715742 | Root | 131.374 |
| SRR9715743 | Root | 117.400 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 123.183 |
| SRR8749028 | MeJA induced 9h | 251.362 |
| SRR8749029 | MeJA induced 9h | 156.027 |
| SRR8749030 | Uninduced | 172.759 |
| SRR8749031 | Uninduced | 118.799 |
| SRR8749032 | Uninduced | 133.261 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 24.181 |
| SRR8400027 | Control - Root | 25.584 |