Gene detail

Gene detail information of Glyur000035s00005017

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07810.1	5.00E-116	RNA-binding (RRM/RBD/RNP motifs) family protein
NR	XP_004486326.1	0	PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like isoform X1 [Cicer arietinum]
COG	YP_003267833.1	5.00E-14	RNP-1 like RNA-binding protein [Haliangium ochraceum DSM 14365]
Swissprot	tr\|Q8W034\|RNP1_ARATH	3.00E-71	Heterogeneous nuclear ribonucleoprotein 1
trEMBL	tr\|G7IP95\|G7IP95_MEDTR	0	RNA-binding (RRM/RBD/RNP motif) family protein {ECO:0000313\|EMBL:AES64505.2}

Sequence

Transcript Sequence

>Glyur000035s00005017.1
ATGTTGTCTCGCCAGTTTAGAAATGAATATGAGGTTTTGTGCTTGGTGGAAATGGACCCTGGCAAGCTATTCATTGGCGGGATTTCCTGGGACACAAATGAAGACCGACTCAGACAGTATTTCCAGAACTTTGGAGATGTAGTGGAAGCTGTGATAATGAAGGATCGCACCACGGGGCGTGCCCGCGGTTTCGGATTTGTTGTTTTTGCTGATCCTTCTATTGCTGAGCGAGTTGTTATGGAAAAGCATGTCATAGATGGTAGAACTGTTGAAGCAAAAAAGGCTGTACCTAGAGATGATCAGAATGTGCTGAACAGAAGCAACAGCAGCAATCATGGGTCACCTAGTCTTACTCCTATCCGCACAAAGAAGATATTCGTCGGAGGTCTAGCATCCACAGTTACTGAGAGTGATTTTAAGAAGTACTTTGATCAGTTTGGAACAATTACAGATGTTGTTGTGATGCATGACCATAACACCAACCGGCCTAGAGGTTTTGGATTCATCACGTATGATTCTGAGGAAGGAGTTGAGAAAGTGCTGTACAAAACTTTTCATGAACTGAATGGTAAAATGGTTGAGGTTAAGAGGGCCGTTCCAAAGGAATTATCTCCAGGTCCAAGTAGAGGCCAGTTAGGTGGATATAGTTATGCTACTAGTAGAGTTAGTAGTTTTGCTAATGGTTGCATTCAGGGATATAATCCAAGCCTCATTGGAGGGCATGGACTTAGAATAGATGGTAGATTGAGTCCTGGTACTGTTGGCCGTAGTGGATATCCTCTTCTGAGTCCTAATTATGGGACAGGATTCAACTTTGAGCAACCATTGAGCCAAAATGAAAATGCAAACTTTGCATCTAACTTTGTCATAGGACGGTCATTGAACTCTTCATACAATGGAAGTCCAAGCAGGTACAATAATGCCATGGGGTATGCTGGTTCAAGTGTTGGCAACAATTCAACCATAAGTTCAACAAATCAGAGTTTGTGGGGTAATGGGAATCTTAACTATACCACTAACCCTGCAAGCTCTGATACTTTTATAGGTTATGGAAGTGAAAACTCAAATATGGGTTCTTTTGGTGGTATTGGATCACTTTGGAGTACCTCCCTTGGTACTAATCAAGCTGGAACTATTGGGTCGGGTTATGGTAAGGGCAGTCTTAGTTATAGGTCTGGAGATGTAATGTTAGGGTCAAAAGCAGTAGGTTATGGAAAAGGCAGTGAAAGCATTGTTGAATCAGCTTCATCATATGCTTTATCAAATGGAAGCTATGATAACATATACAAAGATACTTACGAGGCTGGGCCATTTTATCAGGACCATACATGGAGATCATCAGCTTCAGAACTAGAGGATTCTGGCTCTCTTGGTTTTGGCCTTGAAAATGCTGTTTCAGATTTAATGCGAAAAAGCTCTGGTGGCCACATTGGGGCCTATACTGTTGCTAATAGACAATCAAATAGAGGTAGAACGCTTTTCTCTTTTATTTTCATTTGAAAATCAAAATGTTCTTCATTGTTTAAGGTTCCATACTTACCTTGGCATAGCTAAATTGTTCATGTTTAGATATTAAATTGATTCATGTTCAAATTGATTCTTTGTTCTGTATTCATATAGACATACACTGATTGTGGTTGTTCTCCCAAGAGTNTTGTCAGTAATAGGAGCATGTGCGCACACACACGAGTTCCTAGTGAATTAATTAGTTTAATAAGGACATGTTTCAAAACTGCTGGTTCTGTGTAGAGATTTTAGCCATGTTATCATTATAGTTTGAGTTGTAGTTGAATTGTTTGTCNGAGCGTGTACATCAGATTGAAATCCATAAATATAAGTTTCTGATTTTAAACTTTCCAATTGCAGTGTGATAAACTAAGAGATATAACTTACATGAAAAGGGGAAAAAAAGAAAGATGGGATATTATGGAGTTTAGAATTNAAATTGTAACTGACTATGTGCTGCTGCCTTCCTGTCATTTCCAATGACTATACTGGATGCTTAATTTGATGTTCTTTTACTTGAATCAGAAAGTATGGGAATACAAAGCTTGCATGTATTAATGTGCTTTAGAACATGTTTTGCTTCAGGAATTGCAGCCTAGGAAGGTTATGCCATGGATGCTCTGANGTTTCAACGAGGTATGTCTGGTGCAGAAGGTGAATGATGAATGCGGAAAGCATAAATCTTCTTGTTTCGAGATACTTTGATTCTTCTAGAATTTCATTAGAGCCAGTTGGTTTTGGCTGTGTTGAATAACTTGGGAATACAGAACATTTACAAGGGCTTTACATTATAAGGGTTGATCTTNAGTGAAATATAGGTTTTCTTTCTTTGGGATTTTGAGACTTGTAATCAGGTTATGGAGTTTGTCAAAAATGTCATATGATGCACACCTCTTACCACAGAGTAACACACAAAACAAGAAGACCTACCCTTTTATTTTTTGTTATTTTTTTTTCTCCTTTTCAAACTGTTCTTCCTTCTCCCTCTTCGGGACAGTAGAGTTGGACCGCGTCGCCAGTCTTGGCCAGTATCTTTTAATTATATCTCATGTTCAGTGTTTTGATTTCTCAGAATCTGTAAAAGGTACATGGTTAATTTCTCCATGATATATTATCATGGGATGTTCATCTAGGTTCCATNAAATAATAGCTGATTCATCTTCTACACAAAAACATTTCTTTCTTCTTGTGCCAGTGTAATGGATTGTGTATGATTGATCTCCTGCTTATATTCCAACAATGTGTGTTTATATTATTGTCTATCTTTCATTCAGCCTAAAGTTAAAACAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00035	446272	450360	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000035s00005017.1	PF00076.17	RRM_1	23	90	8.50E-18
Glyur000035s00005017.1	PF00076.17	RRM_1	125	191	5.40E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.545
SRR1783600	control	10.517
SRR1783602	moderate drought stress	8.227
SRR1811619	moderate drought stress	8.174

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	48.600
DRR006520	Root Summer glycyrrhizin high producing strain	47.996
DRR006521	Root Winter glycyrrhizin high producing strain	12.327
DRR006522	Root Winter glycyrrhizin high producing strain	11.620
DRR006523	Root Summer glycyrrhizin low producing strain	40.670
DRR006524	Root Summer glycyrrhizin low producing strain	40.780
DRR006525	Leaf Summer glycyrrhizin high producing strain	19.224
DRR006526	Leaf Summer glycyrrhizin high producing strain	19.024

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	61.270
SRR2868004	Drought Stress (root)	71.026
SRR2967015	Control (root)	62.513

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	35.580
SRR9715740	Leaf	36.512
SRR9715741	Leaf	39.238
SRR9715739	Root	16.132
SRR9715742	Root	79.126
SRR9715743	Root	72.637

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	39.132
SRR8749028	MeJA induced 9h	86.051
SRR8749029	MeJA induced 9h	63.304
SRR8749030	Uninduced	116.911
SRR8749031	Uninduced	223.791
SRR8749032	Uninduced	139.214

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	24.005
SRR8400027	Control - Root	38.009