Gene detail information of Glyur000035s00005015 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G16490.1 | 6.00E-168 | ARM repeat superfamily protein |
| NR | XP_003546191.1 | 0 | PREDICTED: U-box domain-containing protein 4-like [Glycine max] |
| Swissprot | tr|O22193|PUB4_ARATH | 3.00E-82 | U-box domain-containing protein 4 |
| trEMBL | tr|I1MFP6|I1MFP6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G12260.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00035 | 432395 | 434923 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000035s00005015.1 | PF00514.18 | Arm | 209 | 246 | 2.30E-07 |
| Glyur000035s00005015.1 | PF00514.18 | Arm | 291 | 329 | 7.90E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.026 |
| SRR1783600 | control | 14.706 |
| SRR1783602 | moderate drought stress | 16.419 |
| SRR1811619 | moderate drought stress | 16.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 25.023 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 24.450 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.823 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 6.831 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 34.018 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 34.788 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.211 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.316 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 30.079 |
| SRR2868004 | Drought Stress (root) | 26.826 |
| SRR2967015 | Control (root) | 30.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 21.242 |
| SRR9715740 | Leaf | 28.973 |
| SRR9715741 | Leaf | 24.021 |
| SRR9715739 | Root | 50.750 |
| SRR9715742 | Root | 25.746 |
| SRR9715743 | Root | 30.502 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 18.243 |
| SRR8749028 | MeJA induced 9h | 4.435 |
| SRR8749029 | MeJA induced 9h | 6.773 |
| SRR8749030 | Uninduced | 1.588 |
| SRR8749031 | Uninduced | 0.654 |
| SRR8749032 | Uninduced | 1.526 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 36.980 |
| SRR8400027 | Control - Root | 45.002 |