Gene detail information of Glyur000035s00005013 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47530.1 | 9.00E-98 | Auxin-responsive family protein |
| NR | XP_004486229.1 | 0 | PREDICTED: auxin-induced in root cultures protein 12-like [Cicer arietinum] |
| Swissprot | tr|Q9FGK4|B561J_ARATH | 4.00E-140 | Cytochrome b561 and DOMON domain-containing protein At5g47530 (Precursor) |
| trEMBL | tr|I1L009|I1L009_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G01390.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00035 | 411590 | 414122 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000035s00005013.1 | PF04526.8 | DUF568 | 90 | 188 | 4.30E-29 |
| Glyur000035s00005013.1 | PF03188.11 | Cytochrom_B561 | 209 | 333 | 2.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 68.244 |
| SRR1783600 | control | 68.750 |
| SRR1783602 | moderate drought stress | 55.584 |
| SRR1811619 | moderate drought stress | 55.292 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 332.484 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 327.905 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 123.642 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 120.302 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 456.179 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 458.967 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 192.092 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 190.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 136.090 |
| SRR2868004 | Drought Stress (root) | 265.514 |
| SRR2967015 | Control (root) | 211.508 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 448.038 |
| SRR9715740 | Leaf | 231.747 |
| SRR9715741 | Leaf | 661.247 |
| SRR9715739 | Root | 266.167 |
| SRR9715742 | Root | 462.814 |
| SRR9715743 | Root | 406.757 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 135.916 |
| SRR8749028 | MeJA induced 9h | 110.317 |
| SRR8749029 | MeJA induced 9h | 61.708 |
| SRR8749030 | Uninduced | 266.084 |
| SRR8749031 | Uninduced | 54.475 |
| SRR8749032 | Uninduced | 32.194 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 169.571 |
| SRR8400027 | Control - Root | 220.158 |