Gene detail information of Glyur000035s00005010 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G47550.1 | 8.00E-27 | Cystatin/monellin superfamily protein |
| NR | XP_004486226.1 | 3.76E-53 | PREDICTED: cysteine proteinase inhibitor 5-like [Cicer arietinum] |
| Swissprot | tr|Q6TPK4|CYT1_ACTDE | 2.00E-35 | Cysteine proteinase inhibitor 1 {ECO:0000303|PubMed:14697268} (Precursor) |
| trEMBL | tr|G7IM41|G7IM41_MEDTR | 2.00E-50 | Phloem filament protein PP1 {ECO:0000313|EMBL:AES64492.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00035 | 394896 | 395252 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000035s00005010.1 | PF00031.16 | Cystatin | 30 | 114 | 3.80E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 59.388 |
| SRR1783600 | control | 59.702 |
| SRR1783602 | moderate drought stress | 34.510 |
| SRR1811619 | moderate drought stress | 36.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 175.105 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 176.980 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 42.682 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 42.650 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 254.619 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 254.022 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.863 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 64.420 |
| SRR2868004 | Drought Stress (root) | 60.215 |
| SRR2967015 | Control (root) | 163.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 36.875 |
| SRR9715740 | Leaf | 34.222 |
| SRR9715741 | Leaf | 28.999 |
| SRR9715739 | Root | 74.151 |
| SRR9715742 | Root | 54.245 |
| SRR9715743 | Root | 52.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 114.065 |
| SRR8749028 | MeJA induced 9h | 117.183 |
| SRR8749029 | MeJA induced 9h | 68.000 |
| SRR8749030 | Uninduced | 55.661 |
| SRR8749031 | Uninduced | 20.283 |
| SRR8749032 | Uninduced | 55.929 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 62.102 |
| SRR8400027 | Control - Root | 67.093 |