Gene detail

Gene detail information of Glyur000035s00005009

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G47560.1	9.00E-63	tonoplast dicarboxylate transporter
NR	AES64491.2	4.80E-113	tonoplast dicarboxylate transporter [Medicago truncatula]
COG	YP_002602057.1	6.00E-27	Na(+)-dicarboxylate cotransporter [Desulfobacterium autotrophicum HRM2]
Swissprot	tr\|Q8LG88\|TDT_ARATH	2.00E-79	Tonoplast dicarboxylate transporter
trEMBL	tr\|G7IM40\|G7IM40_MEDTR	2.00E-113	Tonoplast dicarboxylate transporter {ECO:0000313\|EMBL:AES64491.2}

Sequence

Transcript Sequence

>Glyur000035s00005009.1
ATGGNCGGAGAAGACACTCCATCACCAACTCCCGATACCCTGAAGGAGCTACTTCTTCCCGTTCACCAGCCAATCCAAGAAACACCACCACCAAACAGCAACAGCACCTCCTTCATCATAGCATCCATTCTAACACTCAAAAACTTTTACATCATTCTAGGACCTCTGTTTTCCCTTGTTATATGCCTCCTCGTGAAGCTCGATGCTCCCGCTACGAGCCAGAAAATGCTTGGCGTGATTGCTTGGGTTTTCACCTGGTGGATCACCGAGGCCGTGCCACTCCCTGTCACCTCCATGTGTCCCCTGTTTCTGNTCCCACTCTTTGGGATTGGTTCAGCTGATAGTGTTGCTCACTCTTACATGGACGACGTGATCACGCTTGTTTTGGGAAGTTTCATACTCGCTCTCGCCGTGGAACGCTACAACGTGCAAAGAAGGTTGGCCTTGAATGTGAGTAACTTTGCTATTTTGCGGCGATCCACTGAACCCTGCGATGTTGCTATTGGGTCTATGTGCGACCACGTTTTTCGTGAGCATGTGGCTGCACAACGTGGCGACGGCGGTGATGATGATGCCGGTGGCTGTGGGGATCCTACAGCGGCTGCCACCGGCGGAGGAGCAAACGGAATTGGTGAACAAGTTCGGCAGAGCGGTGATTCTAACCGTGGTGTATGCTACACCCATCGGAGGGATGAGCACACTAACGGGGACAGGTGTGAACTTGATAGTGATAGGGATGTGGAAGAGCCTTGTACCCGATGCAAAGCCAATCGGGTTCAACACTTGGTTCTTCTTTGGGTTCCCTGCGGCGGTTATTCTCCTTGTTTGCTTTTGGTGCATCCTCTGCTTGATCTATGTCCGAAAGGGCTCGGGTCGGGCTTTGTCGGATTACTTGAGCCCACCTTAAGAGGGACCTTGAAGCTCTTGATGGCCGGAGAAGACACTCCATCACCAACTCCCGATACCCTGAAGGAGCTACTTCTTCCCGTTCACCAGCCAATCCAAGAAACACCACCACCAAACAGCAACAGCACCTCCTTCATCATAGCATCCATTCTAACACTCAAAAACTTTTACATCATTCTAGGACCTCTGTTTTCCCTTGTTATATGCCTCCTCGTGAAGCTCGATGCTCCCGCTACGAGCCAGAAAATGCTTGGCGTGATTGCTTGGGTTTTCACCTGGTGGATCACCGAGGCCGTGCCACTCCCTGTCACCTCCATGTGTCCCCTGTTTCTGTTCCCACTCTTTGGGATTGGTTCAGCTGATAGTGTTGCTCACTCTTACATGGACGACGTGATCACGCTTGTTTTGGGAAGTTTCATACTCGCTCTCGCCGTGGAACGCTACAACGTGCAAAGAAGGTTGGCCTTGAATTTGTTGATAATACTTTGGATGACAAGAAGAATCTCAGATGACCTTCCTGGATGGGGAGTTTGGTTCAATGGCCTTGTTGGTGATGGAAGTGTCAGTGGGGAGAAGCTAATGAACTGGAACGAATGCAAGAAGCTACCTTGGAACCTGATTTTGCTTCTAGGAGCTGGATTTGCCTTGGCCGATGGAGTGCAAACTAGTGGGCTAGCAGATGTTCTGTCAAGAGCCTTAGAGTTCTTGAAAGATGCACCATACTTGGCCATTGTTCCTGCTGTTAGTCTCTTATGTAGCATCATCACTGAGCTCATCACTTCCAATGATGCCACTGCCACCCTTCTTGTTCCCCTTCTCTATCACATAGCCAAGACTATGCACGTGCACCCGCTTCTTCTCATGATCCCCGGAGGCATAGCAACTGAGTTTGCGTTCTGGCTTCCAACTGCTACACCATCCAATGTTGTTGGGTTTGCCACTGGGCACATTGAAATTAAAGACATGCTCAAAATTGGTGTGCCACTTAAGGTTGCTGGGATTGCTGTGCTGTCCCTTCTCATGCCAACACTAGGAGCTATTGTTTTTGGAACAAACGACGGTACTCAATAGGTGACTGACCGATGCAAACTCTCATTGGTTACGGCGTTGATTTCTTCTCCAAATTCCACTCCGATTTATAAAATTTGCGTGAGTATATATATAGAATGAATTCTTATTTTTACAATTATTCAAAAAGAAAAAACAGAGAGAAGAAACAGTAAAACAGAAAATTAAGAAAACACAGAAAGAGGAGCATGATTTTCTTTTTTTTGAATGAACAAGAAATTGATTTAGAGGATTGATGAGGTCTCATTACTCTCATGCTTGATCTCTTTAAGGCCCCATTTATGGTTAATTAAGTTATCTTGATTATAGCTTGATTACAATTTGTGAAATTAGATTCAAGTAGGGGTTGTGTCATGTTTGAGACCATTTGTAAGTTCTGATTTGTTAATTTTTTCAATGTCCCTATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00035	382809	393328	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006814 sodium ion transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0005215 transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000035s00005009.1	PF00939.14	Na_sulph_symp	70	151	1.40E-10
Glyur000035s00005009.1	PF00939.14	Na_sulph_symp	379	464	1.70E-11
Glyur000035s00005009.1	PF00939.14	Na_sulph_symp	494	646	2.30E-21
Glyur000035s00005009.2	PF00939.14	Na_sulph_symp	70	511	5.80E-61

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.419
SRR1783600	control	0.420
SRR1783602	moderate drought stress	0.651
SRR1811619	moderate drought stress	0.628

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.345
DRR006520	Root Summer glycyrrhizin high producing strain	0.402
DRR006521	Root Winter glycyrrhizin high producing strain	0.639
DRR006522	Root Winter glycyrrhizin high producing strain	0.521
DRR006523	Root Summer glycyrrhizin low producing strain	0.276
DRR006524	Root Summer glycyrrhizin low producing strain	0.272
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.486
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.602

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.289
SRR2868004	Drought Stress (root)	6.988
SRR2967015	Control (root)	6.306

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.886
SRR9715740	Leaf	7.314
SRR9715741	Leaf	7.585
SRR9715739	Root	0.193
SRR9715742	Root	0.460
SRR9715743	Root	0.563

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.024
SRR8749028	MeJA induced 9h	5.353
SRR8749029	MeJA induced 9h	3.492
SRR8749030	Uninduced	10.116
SRR8749031	Uninduced	7.138
SRR8749032	Uninduced	5.938

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.273
SRR8400027	Control - Root	1.017