Gene detail

Gene detail information of Glyur000035s00005007.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G12560.2	2.00E-62	F-box and associated interaction domains-containing protein
NR	XP_004486223.1	0	PREDICTED: F-box protein CPR30-like [Cicer arietinum]
Swissprot	tr\|Q9SU30\|CPR30_ARATH	6.00E-77	F-box protein CPR30
trEMBL	tr\|I1MFN9\|I1MFN9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA15G12190.4}

Sequence

Transcript Sequence

>Glyur000035s00005007.1
ACTTAAAGTTCTGTAATCTACTGTACCAAAAAAAAGTTCTGTAATCTTGCCGTATAACTGAGGGCAAAGGAAAGAACGTGAGAAAGTTCGTGGTGTCTCGGTGTCTCCTCCTTGACCTTTTGTGCTAATGCGAAGACGAGAGAATACCACTAAAATGTTTTTTGTCCACGCTACACACAACCCATGACACCACGTGGGGGCCACTATAACCTACCCTAACCTAACCCAAGGCTCAGAATCCGCGTCAACTTTGGTTTCCCCTCTTCGCCTTTGGCGCACGAGAGAGAGAGAGAGAGATAGCAAAAACCCTAACCCGAAAAGGCGGTTCCCAATCCTCTTCACGCCGATGTCGGATATTCCGGCAGAAGTNATCGCCGACATCCTCTCCCGGTTGCCGGTTCCATCCCTCCTCCGATGCCGTTCAATCTCCAAGTCATGGCGTTCCCTAATCGACAGCCACCACTTCATAACCCTCCACCTCAACAAGTCCCTCACCTTCAAATCCAACACCAACAACAACCACCTCAACCTCATCCTCCGCCACGACTCCGAGCTCTACCATGTCGATTTCCCTTCGCTGAGCGCCGCCGTACAGCTCAACCACCCTCTCATGTGCTACAGCAACCGAATCACTCTCCTCGGCTCCTGCAACGGCCTCCTCTGCATCTGCAATGTCGCCGACGACATCGCCGTCTGGAACCCTTCACTCCGTAAGCACCGGATCCTCCCTTANCTCCCTACACCTCGCCGGCCGGATCCCGACACCACCCTCTTCGCCGCCCGCGTCCACGGCTTCGGCTTCGACCCCTTCGCCGGCGACTACAAGCTCGTTAGGATCTCTTACTTCGTAGATCTCCACGACCGTACCTTCGATTCACAGGTGAGGCTCTACAGCTCCAGGACCAACACGTGGAAAACACTCCCCAGCATGCCCTATGCCCTCTGCTGCGCTTTAACCATGGGGGTTTTCGTTGACCACGCNCTCCACTGGGTCGTGACGCGCAAACTCGAACCGAATCAACCCGATTTGATCGTCGCGTTTGACCTTAGGCTCGAGATTTTCGTTGAGGTGCCTCTTCCCGAATTGGGGATCGGTAGTTTGAGTTTCGAAATCGATGTGGCTCTTTTGGGAGGGTGCCTTTGCATGGTGGTGAATTATCAGAACAGNGTGGTTGATGTTTGGGTGATGAAGGAATATGGATCCAAAGATAGCTGGTGTAAACTGTTCACTCTTGTGCAGTCGCGTGAGATGAGATCGTTGAAATCTCTGAGGCCTTTGGGTTACTCGAGTGATGGGGATAAGGTTCTGTTGGAACACGACCGCAGGAAGCTCTGTTGGTACAACCTCAGAAGCAAACAAGTCAGCTATGTTAGGATTCCGGGGATGCCCAATTTAAATGAAGGAATGATTTGTGTGGGAAGCCTTGTCCCACCATCTTTACCCTTACTACCTAGTGAAAATTATAGGAATCGGCACAACCTGAGATGCGAAACTACAAGGAAGAAAAAAAGGGATGACTTCCTGTCCCAAGGATTCAAATTGTCATTCCTTGATTTTGCACCTTATGTTTTCTCAGCGAAGAAGGTGAAACGTGAAACAAAGGCTAGCATAGTGAAAGAAAGGGCTCTTGAAGATGAAGAAAACAATAATTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00035	372883	375390	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000035s00005007.1	PF00646.28	F-box	2	40	9.50E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	61.047
SRR1783600	control	61.234
SRR1783602	moderate drought stress	70.432
SRR1811619	moderate drought stress	68.871

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	51.910
DRR006520	Root Summer glycyrrhizin high producing strain	50.609
DRR006521	Root Winter glycyrrhizin high producing strain	62.415
DRR006522	Root Winter glycyrrhizin high producing strain	60.025
DRR006523	Root Summer glycyrrhizin low producing strain	68.245
DRR006524	Root Summer glycyrrhizin low producing strain	66.082
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.791
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.630

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	50.273
SRR2868004	Drought Stress (root)	71.386
SRR2967015	Control (root)	78.267

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	96.442
SRR9715740	Leaf	77.519
SRR9715741	Leaf	96.099
SRR9715739	Root	67.598
SRR9715742	Root	75.413
SRR9715743	Root	73.969

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	51.915
SRR8749028	MeJA induced 9h	67.370
SRR8749029	MeJA induced 9h	56.131
SRR8749030	Uninduced	55.863
SRR8749031	Uninduced	59.078
SRR8749032	Uninduced	55.289

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.812
SRR8400027	Control - Root	55.178