Gene detail

Gene detail information of Glyur000035s00005003

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G07880.1	2.00E-83	Immunoglobulin E-set superfamily protein
NR	XP_004486219.1	3.39E-145	PREDICTED: rho GDP-dissociation inhibitor 1-like [Cicer arietinum]
Swissprot	tr\|Q9SFC6\|GDIR_ARATH	7.00E-110	Rho GDP-dissociation inhibitor 1
trEMBL	tr\|I1MR10\|I1MR10_SOYBN	3.00E-140	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G01250.1}

Sequence

Transcript Sequence

>Glyur000035s00005003.1
GTGGGTCGTTACTCCTTTGGCTTCTTTCTTTCTTTCTGTGTGTCTTTAGCTTTGTGTCACACACCTTTGTCTTTTTTCTTTCTCTCTCTCTCTCTCTCTGCGTGAGTTGATTGAGTTGATGGGTTGTTGTTGTTGATGTCTCTGGCCATTGGAGTGGTTTCGAATTCCGAAAGAAGCATGGGTTTTGATGACAATGTGAAAGACAATAATGAGGAGGGTGCTGCTGCAGAGGATAATAATGATACCTCTCGGGTTGGTGAAGAGAGTGGCGGCGAGGAAGGGGGAACCCTCAGCAGATACAAGAGTGAGAGTTCTGTTGCTGCCACCGAGGATGAAGATGATGATGAGGAGAGGAAGATTGAATTGGGACCCCAGTGCACGTTAAAGGAGCAACTCGAAAAGGATAAGGATGATGAGAGCTTGAGGAGGTGGAAGGAGCAGCTTCTTGGAAGTGTTGACATCAATGCTGTTGGAGAAACTCTGGAGCCAGAAGTAAAGATCCTTAGCCTTGCAATCAAGTCGGCTGATAGAGATGATATTGTTCTTCCAATACCAGAAGGAGGAAATCCCAAGGGCTTGTGGTTTACTTTGAAAGAAGGTAGCCGTTACAGGCTGGTGTTCACTTTCCAGGTCAGCCATAACATAGTTTCAGGTCTCAAATACACCAACACTGTGTGGAAAACTGGTATCAAAGTTGACAGCACTAAAGAAATGATTGGAACCTTCAGCCCCCAAGCAGAGACTTACACACATGAGATGCCTGAAGAGACAACACCATCTGGGATGTTTGCTAGAGGGGCATATTCGGCTAGAAGTAAGTTTGTTGATGATGATAACAAGTGCTACTTGGAGATCAACTACACTTTTGATATCCGNAAAGACTGGCAGTAGTAGGAGCAAACTGAATTCTCCTACAGTGACATGTTTAATCCTTGATCATTGTTATTTGTGCTGAAATCTCCTTCAGTGTTTACTTGCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00035	338850	341566	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005737 cytoplasm

molecular_function
GO:0005094 Rho GDP-dissociation inhibitor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000035s00005003.1	PF02115.12	Rho_GDI	57	249	9.00E-68

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	9.545
SRR1783600	control	9.715
SRR1783602	moderate drought stress	9.514
SRR1811619	moderate drought stress	9.363

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.046
DRR006520	Root Summer glycyrrhizin high producing strain	4.090
DRR006521	Root Winter glycyrrhizin high producing strain	0.792
DRR006522	Root Winter glycyrrhizin high producing strain	0.805
DRR006523	Root Summer glycyrrhizin low producing strain	3.965
DRR006524	Root Summer glycyrrhizin low producing strain	4.186
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.221
DRR006526	Leaf Summer glycyrrhizin high producing strain	16.822

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.928
SRR2868004	Drought Stress (root)	21.444
SRR2967015	Control (root)	23.400

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	20.821
SRR9715740	Leaf	23.819
SRR9715741	Leaf	24.624
SRR9715739	Root	4.463
SRR9715742	Root	5.686
SRR9715743	Root	7.418

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.311
SRR8749028	MeJA induced 9h	19.706
SRR8749029	MeJA induced 9h	23.937
SRR8749030	Uninduced	30.168
SRR8749031	Uninduced	14.321
SRR8749032	Uninduced	7.877

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.502
SRR8400027	Control - Root	25.063