Gene detail

Gene detail information of Glyur000035s00004988

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G62400.1	2.00E-176	Protein kinase superfamily protein
NR	XP_007154003.1	0	hypothetical protein PHAVU_003G082800g [Phaseolus vulgaris]
COG	YP_001958461.1	9.00E-38	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	0	Serine/threonine-protein kinase HT1
trEMBL	tr\|V7C735\|V7C735_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW25997.1}

Sequence

Transcript Sequence

>Glyur000035s00004988.1
CAAAGTCTGAGAAGACTGCAAAAGTGCCAATTGTTGGATGAGCTAATCGCAATGCTCAATTCACCTCGCTTTGCACTGTGACCACTTAGTAGCATTGATGATAAATTGATAATGCAGGAAAAGAAACCCAAACAGAACCAAGCANGCAAGCTCAATAAAATCGACCCAAAAAAGTCTCTCTCTCTTTCACTCTCACTGATTCACTTTTGAACCAAAGCAGTCACGAGACACCCTTGAAGCTATCTGCCTTTGAATTCATCTTTATGCTGCTACACGACCTAATCCTGTTAGGAAAAACCGTGAAAACTTCTGCTTCTTCTTCTTCTTCTCTCTTTTCACACGGGGAACAGTTTCCTTTTTATGTCTCCAATTTCTTCAGTATCCCTCTCTGTTTCTGCTACCGTCCCTGCAGGAGGTTCTTGTATGCTCTAAGATTTTTTATCCATCACAACTTTGATACACAAAGTAAGTAACCATTGTTTGACAAGGAAAAAAGAAATGGTTCCATAACATTCAAAGGATCTTCTTTGAATTTTCGAACTCGTCAATTCTCTTGGAATTTGCGCTCTAATCCCTATAAAACAGGATGCTCCTAAGGTGAGGANTGTCCGTGCTTTATATATTCTATTTAGGAGACTTAGTTTTTCCGAATAAATTGAGGTTTCATGAAAACCCAGACATATTTTTCATTTCATCCTTCTTTGGAGCCAGCCCATGTTTCGAAATCGGTTCATGCACTTCCTGAAATCAATTCACACATTCAGGAGGAAAATTACNACTTCTGAGTACTGTCTGTAATCTTGACAAGCATCACACCACATCATTACAAAGGTTTGTTTCACAAAACACACAAAAAACCATTTTCATTTTCATAATAAACAACCAACCTTTTAGCTAGAGCTAGTATAGCTTTTTCAATGGCGGGGTCATGTTTCCTGCACGGGCTTAGACTGAGAAGGTCAAAGAGTAAACCTTTACCATCCCCTTCATCATCTTCCAAGACCCNCAGGTTTGACTCTGATAGGGAGAACATGGAAAGGAAGAGATTTGATAGCATGGAATCATGGTCCATGATATTGGACTCTGAGAACTTGGATACATGGGAGGATCCAAAGGAGGAGAGGGAGGAATGGAGTGCTGANCTGTCACAGCTTTTCATAGGTAACAAGTTTGCTTCTGGGGCTCACAGTAGGATTTACCGTGGAATATACAAGCAGAGAGCTGTTGCTGTGAAAATGGTGAGGATTCCAACCCATAACGAGGAGAGAAGAGTCTTACTGGAGCAGCAGTTTAAGTCTGAAGTGGCTTTACTTTCACGTCTCTTTCATCACAACATAGTGCAGTTTATTGCAGCATGTAAAAAACCGCCAGTGTACTGTATCATAACAGAATACATGTCTCAAGGAACACTGAGGATGTACCTGAACAAGAAAGAGCCATACTCACTTTCAATAGAGACAGTACTAAGGTTAGCTCTTGACATATCTAGGGGTATGGAGTACCTTCATTCACAGGGTGTGATTCACAGAGACCTCAAGTCAAATAACTTGCTCCTCAATGATGAGATGAGGGTTAAGGTTGCAGATTTTGGTACATCATGCCTTGAGACAAGGTGCCAGGAGACCAAAGGAAACATGGGAACATATCGTTGGATGGCACCAGAGATGATTAAGGGGAAACCTTATACTCGTAAAGTTGATGTGTATAGTTTTGGTATTGTACTTTGGGAGCTTACAACCGCTCTACTTCCCTTCCAAGGAATGACCCCAGTGCAAGCTGCTTTTGCTGTGGCGGAAAAGAACGAAAGGCCTCCAATGCCGGCTAGTTGTCAGCCAGCACTAGCACACCTGATAAAGCGTTGCTGGTCAGCAAACCCCTCAAAGAGGCCAGATTTCTGTGACATTGTGTCTGCTTTGGAGAAGTACGATGAGTGTGTCAAGGAGGGCCTCCCTCTAACTCATCATTCAGGGTTAGTCAGCAGAAATGTTATTATTGAACGCCTAAAAGGCTGTGTATCCATGAACTCCTCCATACCTGTACATGCCTAATTGGNCTACAAGGTATATTATATTGTTATTTTCCATCTTCATGCTCAATATTACTTTTATATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00035	257078	262075	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:2.1.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000035s00004988.1	PF07714.12	Pkinase_Tyr	81	333	2.20E-66

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.917
SRR1783600	control	1.996
SRR1783602	moderate drought stress	3.286
SRR1811619	moderate drought stress	3.309

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.393
DRR006520	Root Summer glycyrrhizin high producing strain	7.574
DRR006521	Root Winter glycyrrhizin high producing strain	4.484
DRR006522	Root Winter glycyrrhizin high producing strain	4.471
DRR006523	Root Summer glycyrrhizin low producing strain	14.499
DRR006524	Root Summer glycyrrhizin low producing strain	15.184
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.373
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.281

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.931
SRR2868004	Drought Stress (root)	6.553
SRR2967015	Control (root)	7.027

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.601
SRR9715740	Leaf	3.222
SRR9715741	Leaf	3.055
SRR9715739	Root	1.200
SRR9715742	Root	3.711
SRR9715743	Root	3.232

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.533
SRR8749028	MeJA induced 9h	0.198
SRR8749029	MeJA induced 9h	0.320
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.036
SRR8749032	Uninduced	0.027

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.027
SRR8400027	Control - Root	3.537