Gene detail information of Glyur000035s00004983.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G05530.1 | 2.00E-85 | indole-3-butyric acid response 1 |
| NR | NP_001240216.1 | 2.81E-144 | uncharacterized protein LOC100809582 [Glycine max] |
| COG | YP_007225595.1 | 6.00E-48 | dehydrogenase [Echinicola vietnamensis DSM 17526] |
| Swissprot | tr|H9BFQ2|TPRL3_ERYCB | 4.00E-125 | Tropinone reductase-like 3 |
| trEMBL | tr|C6TLW3|C6TLW3_SOYBN | 1.00E-144 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G11980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00035 | 223392 | 226605 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K11147 | DHRS4 | EC:1.1.-.- | Retinol metabolism | map00830 |
| Peroxisome | map04146 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000035s00004983.1 | PF13561.1 | adh_short_C2 | 20 | 267 | 3.20E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.707 |
| SRR1783600 | control | 1.694 |
| SRR1783602 | moderate drought stress | 1.758 |
| SRR1811619 | moderate drought stress | 1.633 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.603 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.168 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 15.532 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 15.965 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.405 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.564 |
| SRR2868004 | Drought Stress (root) | 0.558 |
| SRR2967015 | Control (root) | 0.538 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.424 |
| SRR9715740 | Leaf | 5.561 |
| SRR9715741 | Leaf | 5.646 |
| SRR9715739 | Root | 0.593 |
| SRR9715742 | Root | 20.536 |
| SRR9715743 | Root | 15.674 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.398 |
| SRR8749028 | MeJA induced 9h | 3.860 |
| SRR8749029 | MeJA induced 9h | 13.835 |
| SRR8749030 | Uninduced | 0.097 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.305 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.031 |
| SRR8400027 | Control - Root | 2.789 |