Gene detail information of Glyur000035s00004980 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25070.1 | 9.00E-09 | RPM1 interacting protein 4 |
| NR | XP_004486202.1 | 5.42E-80 | PREDICTED: RPM1-interacting protein 4-like [Cicer arietinum] |
| Swissprot | tr|Q8GYN5|RIN4_ARATH | 8.00E-22 | RPM1-interacting protein 4 |
| trEMBL | tr|K7LB62|K7LB62_SOYBN | 6.00E-67 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G01151.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00035 | 214389 | 215191 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000035s00004980.1 | PF05627.6 | AvrRpt-cleavage | 5 | 36 | 3.00E-08 |
| Glyur000035s00004980.1 | PF05627.6 | AvrRpt-cleavage | 160 | 192 | 5.60E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.288 |
| SRR1783600 | control | 0.276 |
| SRR1783602 | moderate drought stress | 0.442 |
| SRR1811619 | moderate drought stress | 0.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.918 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.906 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.338 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.943 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.130 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 19.717 |
| SRR2868004 | Drought Stress (root) | 16.453 |
| SRR2967015 | Control (root) | 9.381 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.426 |
| SRR9715740 | Leaf | 0.247 |
| SRR9715741 | Leaf | 0.140 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.354 |
| SRR9715743 | Root | 0.563 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.100 |
| SRR8749028 | MeJA induced 9h | 0.776 |
| SRR8749029 | MeJA induced 9h | 1.038 |
| SRR8749030 | Uninduced | 0.532 |
| SRR8749031 | Uninduced | 1.295 |
| SRR8749032 | Uninduced | 3.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.159 |
| SRR8400027 | Control - Root | 2.440 |