Gene detail

Gene detail information of Glyur000035s00004978

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G20300.1	8.00E-104	Protein of unknown function (DUF3537)
NR	XP_004486201.1	0	PREDICTED: uncharacterized protein LOC101488219 [Cicer arietinum]
trEMBL	tr\|Q2HTI8\|Q2HTI8_MEDTR	0	Extracellular ligand-gated ion channel protein {ECO:0000313\|EMBL:AES64416.1}

Sequence

Transcript Sequence

>Glyur000035s00004978.1
CCCTGCTTTCATCTATCATGAATTTCATTTCATTTTAATATATTTAAAAATATTTAACAACTTATTATATTCATAAAAATAATATTTATGAGGTTGCCATTTGCCATTCGTGAATCAAAAAGACAGGACACTGGGCATTCACGAAGGGTTTCCGTAAAGAACCAATCAACTATTATTTATTTNGCGTAAAAAAATAGCAATCAATATTGCCCACGTAATTTTTGGGTATATTCAGGAGCAAGTGGTGGGAAGGTTTCGTTCTCCTACTACTAGAGCTGCCGATGCAAATGAGCGTGTTGAAATCCAAAGAGCACACACATTCCGCCAAGTCAGCACGCCTGTGAGTTGTCCATAGCTTTGTNGATTATTAAACGACCAAAACCGGTGAAACCTCCAGTTGTCCACTGACCATTCATTTCGCCGCTTCTCACGCGGCTGGTTTGGTTGGTCCCTGCTTTCTCGCCATTTTTTCTTAAACAAATCAAAACAAACAATGCAATTAATCAATCCATCTTTAAAATTACTTTAAACCAAAAAAAATATAAAATTCTGCCACTTCAACTTATTTCGGCTAGAATTCATTCAATCCAGAATAGCTTCAAAGACAAACATCCACTGTAATCAAGAGTAGATGAACTCAACTCAGAGACATTTTACAATTTACATATTGCTTTTGGGTTGGCGAACCCATTTGGGGTCCATTTGGGTGGAGTGCATTTCTTAACCACGAANACCATGTGAACGTGGCAAACGGCGACAATCACAGTAATAATTAAACTAATGTGAGTTGTTAACATTGACATGAGGCTAGCTAGCTGGCTATGAAAAAAGGCTTATTCATGTGATCGTGACAACAACCATAAATTTATTTAAGNTATAAATTTTTTGCTGCAAGGATTTGAAAAGGAGAAGCAGAGAGAGATAGAGGGAGTTGAAACAGCGACTAAACGACACCCTCCTAGGAAGGATCTTGTAGTGTGTGTTTTTTTTTGTGTGTTCATCTGGTTCTCTGGTTCTGGCACACAGAAAACTTCCCAAATTTCCGAGGCTATGGAAGATGAAAGAGGGTCAAGCCTTCTACCATCGGACAAGGAGAACCCTGGTTACATAACCCGTGATGGAGCAGAATTAAGGAACTTTAGATCATACCTGAGATGGTTCTACGTGGATCAATCCAACCTATGCAAAGCTGGTCTCTCTTGGTCCGTGTTCTTCACCTTGTCCTACGTTATACCCATTGCGTCACACTTTCTACTCGATTGTCCCAACACCTGCGACGCTGATCACAGTAGACCTTACCACATTCCCGTGCAGATCTCTCTCTCCGTGTTTGCTACCCTCTCTTTCCTCAGCCTCTCTCTGTTTGACCGTAAATATGGTTTGAGCAAGTTTCTGTTCCTTGATAAAGTCAGCGATGAAAGCCTCAAGATTCAACGGGGGTATGCTGAAAAGATGAGGGGAACCATGAAGCTCATCTTGCTGTGGGGGCTTCCCTGTTTCATAGCTGAATGTGCCTACAGGATATGGTGGTACGTCTCAGGAGCATCCCAAATACCATATTATGGCGAAATATACGTGAGCAGCATCATTCTGTGCACATTGGAGCTATGTTCTTGGATGTATCGAACCTCAATTTTCTTCTTGGTGTGTGTTCTCTTTCGACTCATCTGCTACCTGCAAATCCTCAGACTAGAGGACTTTGCTCCTGTTTTCCAAAGAGAAACTGAGGTAGGGTCGATCCTGTTGGAGCACCTAAGATTAAGAAGGAACTTGCGGATCATCAGCCATCGTTTTCGAGGTTTCATTTTGTCTTCTCTGCTTTTGGTGACAGCGAGCCAGCTCATTTTTCTGCTTATGGTTACAAAACCCCATGCTGATTTGGTCTCCATCACCCTGGTGAGTGGACTTTACATACTCCTGCGAAGCGCAACCAAGATCACACATAAAGCACACTCCATCACAGGCCTTGCAGCCAAGTGGCATATATGTGCCACCATAAACTCTTTTGACAACATTGATGGTGAGACACCTACGGCACAGATGGCTACAGCACAAGCCATGGCTATCAATATTAATTTGGGATCCTCAGATGAAGATGAGATGGGAGATGAAGAGGATGAGTTGGATAACACCAAAATGCTTCCAATTTACACCCACACCATCTCATTCCATAAGAGGCAGGCTCTAGTGACATACATGGAGAACAATAGAGCAGGAATCACAGTGTATGGATTCATGCTTGACAGAACATGGCTTCACTCCATTTTTGGTATTCAATTGGCTCTCTGCCTTTGGCTACTTAACAAGACAGTTGGTATTTAGAGACAGAAAAGGAAAAAGGAACTGCTGTGATGTGATCCTCCTACGTTGTGCAATGTGCATTATATACCTTGTCAATAGTCATCAGTTCATTTGAGATGTAAATGATGCACGTTTGTTTGCTCCACCACATGTTGTTGAGACTGTTGTAAAATGTGTCTGCATCTCCTACTACTCAGCGGGGCAAATCCTCATGTACTCATATAGATGACACACAACAGTAAATGGCACATTGTAGTGCAGAGCCACTGAGCCATCAACTAGCGTTTGCTGCTATACGGCTGAAACCTTGCTGCAGATTAGAAGTTTTTAATCNCGTGTCTATTGCTTTACATATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00035	208797	212661	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000035s00004978.1	PF12056.3	DUF3537	24	408	1.40E-170

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.292
SRR1783600	control	15.359
SRR1783602	moderate drought stress	30.862
SRR1811619	moderate drought stress	30.545

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.283
DRR006520	Root Summer glycyrrhizin high producing strain	15.132
DRR006521	Root Winter glycyrrhizin high producing strain	16.325
DRR006522	Root Winter glycyrrhizin high producing strain	16.482
DRR006523	Root Summer glycyrrhizin low producing strain	20.043
DRR006524	Root Summer glycyrrhizin low producing strain	19.752
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.156
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.187

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.217
SRR2868004	Drought Stress (root)	41.640
SRR2967015	Control (root)	27.867

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.596
SRR9715740	Leaf	12.821
SRR9715741	Leaf	13.908
SRR9715739	Root	17.683
SRR9715742	Root	24.047
SRR9715743	Root	21.528

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	106.846
SRR8749028	MeJA induced 9h	139.901
SRR8749029	MeJA induced 9h	133.245
SRR8749030	Uninduced	175.588
SRR8749031	Uninduced	84.536
SRR8749032	Uninduced	93.675

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.014
SRR8400027	Control - Root	24.812